Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1238 ATGGAGGACTTAAAGGAAAAGGTCAAGGAAGGGGAACCAAAGCAAGTCAAGTACAGAGGAGTACGGAGGAGGCCATGGGGAAAGTTTGCCGCAGAGATTAGAGATTCAACTAGACATGGAGCTCGTGTGTGGCTTGGGACCTTTAACACTGCTGAGGAGGCTGCAAGAGCTTATGATCGTGCTGCCTTTGAGATGAGAGGGACTTTGGCCATTCTCAACTTCCCAAATGAACATCCTCCATGCAATGTGGCTTCTCTTAGCAAGTGCTCCTCATCATCTAAAACTGAGCTTGGTAAACAAGTTCTAGTATTTGAGTGTTTGGATGACAAATTGTTAGAGGAACTCCTCGATTGTGATGAGAAAAGCATCAATGAAAACTAG 381 0.4514 MEDLKEKVKEGEPKQVKYRGVRRRPWGKFAAEIRDSTRHGARVWLGTFNTAEEAARAYDRAAFEMRGTLAILNFPNEHPPCNVASLSKCSSSSKTELGKQVLVFECLDDKLLEELLDCDEKSINEN 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1238 126 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Ssu4g1238 126 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Ssu4g1238 126 PANTHER DNA-BINDING DOMAIN 8 87 IPR044808 GO:0003700|GO:0009873
Ssu4g1238 126 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Ssu4g1238 126 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
Ssu4g1238 126 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Ssu4g1238 126 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Ssu4g1238 126 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Ssu4g1238 126 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Ssu4g1238 126 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 8 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1238 Ssu-Chr4 19847741 19848121 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1238 14 121 AP2-EREBP Transcription Factor Family AT3G23230 61.475 1.61e-43 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g1238 AP2 6.2e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1238 - - gmx:100800069 199.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1238 4 19847741 19848121 Ssu4g1238 4 19847741 19848121 ECH