Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1237 atggagggagggagaggAGTTGCTAATGGAAACGCAGAAGTTCGGTACAGAGGGATTCGTAGGAGGCCATGGGGTAAGTTTGCAGCAGAGATTCGTGACCCCACAAGAAAAGGGGCTCGCATATGGCTTGGAACCTTTGACACCGCCGAGCAAGCTGCACGTGCTTATGATGCCGCTGCTTTTCATTTTCGTGGTCACAGGGCCATACTCAACTTCCCAAATGAGTATGGCAACACCACTCATAACCCAAACACGACTTTAACTTCATTGCCTCTTCCTTCTTCGTCTTCTCTCCCTTCCTACTCTGGTGAGGGCTTTTCAAAAGCTGGTTCGTCACAACAAAATGGTGATGACGCTTTTGAATTGGAATACTTGGACAATAAGTTGTTGGAAGAACTGCTTCAGGCGCCTGATGGTACACGCAACTCAACAGCAGATTAA 441 0.458 MEGGRGVANGNAEVRYRGIRRRPWGKFAAEIRDPTRKGARIWLGTFDTAEQAARAYDAAAFHFRGHRAILNFPNEYGNTTHNPNTTLTSLPLPSSSSLPSYSGEGFSKAGSSQQNGDDAFELEYLDNKLLEELLQAPDGTRNSTAD 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1237 146 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Ssu4g1237 146 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Ssu4g1237 146 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Ssu4g1237 146 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Ssu4g1237 146 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
Ssu4g1237 146 MobiDBLite consensus disorder prediction 76 118 - -
Ssu4g1237 146 Pfam AP2 domain 15 66 IPR001471 GO:0003700|GO:0006355
Ssu4g1237 146 MobiDBLite consensus disorder prediction 76 120 - -
Ssu4g1237 146 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Ssu4g1237 146 PANTHER DNA-BINDING DOMAIN 12 135 IPR044808 GO:0003700|GO:0009873
Ssu4g1237 146 PANTHER - 12 135 - -
Ssu4g1237 146 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1237 Ssu-Chr4 19768124 19768564 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1237 11 141 AP2-EREBP Transcription Factor Family AT3G23230 57.252 1.54e-42 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g1237 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1237 - - vun:114173094 187.963
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1237 4 19768124 19768564 Ssu7g2216 7 43728355 43728780 PCT