Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1236 ATGCTGGGAGGGCGACACGCTGATGCTGACACAATTCCTTTGGTAAGTTGTTATGCGTGTGCGTATGGGATTGCGTTTGAGAGCTACTCTGTTTCGGGGGACCCTTTTTCCTGGGACTACAACGACTTCGTTTTGGACGACATCTTCAACTTGAGCGACCACTCATCGCAATCACGAACGAAGGAATCATCATCCCTTTCCAACTTTTCAGCTTCTCACAGCAGCGTGGAGTCGCAAGAAGTCTCCTCCAACGAAAAAGTGAGAGAAACTCAACCGTCGCCGCCGAAGGAGGCTAGGGTGTACCGAGGAGTGAGGAAGAGGCCGTGGGGGAAGTTCGCGGCGGAGATAAGGGACTCCACGCGAAACGGCGTTCGAGTGTGGATTGGCACGTTTGACACGGCGGAAGCGGCGGCTTTGGCTTACGACCAAGCCGCGTTCTCGACGAGGGGGTCTCTTGCGGTGCTGAATTTTCCGGAGGAAGTGGTGAGGGAGTCTCTCAGAGACATGCCGAGTAAGCCTTGGGAAGAGGGTTCATCCCCTGTGTTGGCGCTCAAGAGGAAACACACCATGAGAAGAAAGTCCAGTGCTAAGAAGAAGAGCAAGAGCGATCGCCGGGAACAATTGGAGTTCGGCGGCACTTCGCAAAATGTGCTCGTGTTCGAGGATTTGGGTGCCGAGTATCTAGAACAGCTTTTGAGTTTGACTTCGTAG 711 0.5373 MLGGRHADADTIPLVSCYACAYGIAFESYSVSGDPFSWDYNDFVLDDIFNLSDHSSQSRTKESSSLSNFSASHSSVESQEVSSNEKVRETQPSPPKEARVYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAAFSTRGSLAVLNFPEEVVRESLRDMPSKPWEEGSSPVLALKRKHTMRRKSSAKKKSKSDRREQLEFGGTSQNVLVFEDLGAEYLEQLLSLTS 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1236 236 SUPERFAMILY DNA-binding domain 100 159 IPR016177 GO:0003677
Ssu4g1236 236 MobiDBLite consensus disorder prediction 187 208 - -
Ssu4g1236 236 ProSiteProfiles AP2/ERF domain profile. 100 158 IPR001471 GO:0003700|GO:0006355
Ssu4g1236 236 PANTHER DNA-BINDING DOMAIN 23 233 IPR044808 GO:0003700|GO:0009873
Ssu4g1236 236 MobiDBLite consensus disorder prediction 57 89 - -
Ssu4g1236 236 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 23 233 - -
Ssu4g1236 236 Gene3D AP2/ERF domain 100 160 IPR036955 GO:0003700|GO:0006355
Ssu4g1236 236 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Ssu4g1236 236 PRINTS Ethylene responsive element binding protein signature 124 140 IPR001471 GO:0003700|GO:0006355
Ssu4g1236 236 MobiDBLite consensus disorder prediction 57 101 - -
Ssu4g1236 236 Pfam AP2 domain 100 150 IPR001471 GO:0003700|GO:0006355
Ssu4g1236 236 CDD AP2 101 159 IPR001471 GO:0003700|GO:0006355
Ssu4g1236 236 SMART rav1_2 100 164 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1236 Ssu-Chr4 19723454 19725446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1236 68 232 AP2-EREBP Transcription Factor Family AT2G31230 49.744 2.54e-54 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu4g1236 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1236 K14516 - gmx:100779524 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1236 4 19723454 19725446 Ssu4g1236 4 19723454 19725446 ECH
Ssu4g1236 4 19723454 19725446 Ssu7g2217 7 43744929 43745663 PCT