Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1234 ATGGCAAAGGAGCAAATTCAGGTGCTAAATGCGCTTGATGTGGCAAAAACACAATGGTACCATTTCACGGCAATCGTCATTGCTGGAATGGGCTTCTTCACTGATGCATATGATCTATTCTGCATATCCCTTGTTACAAAGTTGCTTGGCCGCATATACTACCACGTTGATGGCGCACCAAAGCCCGGTACCTTGCCTCCCAATGTATCAGCTGCAGTAAATGGTGTGGCTTTCTGTGGAACACTTTCAGGCCAGCTTTTCTTTGGCTGGCTTGGTGATAAGATGGGAAGGAAAAAAGTCTATGGCATGACTCTGATGCTGATGGTAATATGCTCCATTGGTTCCGGCCTTTCATTCGGACATAGTGCAAAATCCGTGATGGCAACTCTTTGCTTCTTCCGGTTCTGGCTTGGGTTTGGTATTGGCGGAGACTATCCACTTTCTGCTACCATAATGTCTGAGTATTCTAATAAGAAGACTCGCGGTGCCTTCATTGCTGCAGTGTTTGCCATGCAGGGTTTTGGAATTTTGGGAGGTGGTATATTTGCAATTATAATTTCAGCTGCATTCAAGGATAGGTTTGATGCTCCAGCATATGAGGTTGATCCAGTTGGCTCAACTGTTCCACAAGCAGACTACATCTGGAGGATAATTGTGATAGTTGGAGCACTCCCGGCTGCATTGACTTACTACTGGCGGATGAAGATGCCCGAAACTGCCCGTTATACCGCTCTAGTCGCCAAGAACACGGAGCAGGCGGCAGCAGATATGTCTAAAGTTCTGCAGGTTGAGATTCAAGCTGAACCGCGGAAAGAAGGGCCGGCAAAGGCTAAGTCATACGGCTTGTTCTCAAAGCAGTTCCTCAGTCGCCACGGACTGCATCTACTTGGTACAGCAAGCACATGGTTCTTGCTTGATATTGCATTTTATAGCCAAAATCTATTCCAGAAGGATATCTTCAGCGCAATTGGTTGGATACCTCCTGCAAAGACCATGAATGCCATTGAGGAGAGCAAAGCAGATGCAGGGTACCCTGCAGGTATTGGTGTGAAGAATGCACTTATTGTCTTGGGTGTGGTTAACATTTTAGGCTTCTTCTTTACTTTCTTGGTCCCTGAGGCAAAGGGAAGATCATTGGAGGAGATGTCAGGTGAGAATGATGAGGATGTTGGAACCGGGGAAGAGTCAGAGCAGTCACGTTcttacaacaacaacagaacTGTTCCATATGTTTAG 1236 0.4579 MAKEQIQVLNALDVAKTQWYHFTAIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAPKPGTLPPNVSAAVNGVAFCGTLSGQLFFGWLGDKMGRKKVYGMTLMLMVICSIGSGLSFGHSAKSVMATLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILGGGIFAIIISAAFKDRFDAPAYEVDPVGSTVPQADYIWRIIVIVGALPAALTYYWRMKMPETARYTALVAKNTEQAAADMSKVLQVEIQAEPRKEGPAKAKSYGLFSKQFLSRHGLHLLGTASTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKTMNAIEESKADAGYPAGIGVKNALIVLGVVNILGFFFTFLVPEAKGRSLEEMSGENDEDVGTGEESEQSRSYNNNRTVPYV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1234 411 MobiDBLite consensus disorder prediction 380 411 - -
Ssu4g1234 411 MobiDBLite consensus disorder prediction 396 411 - -
Ssu4g1234 411 Gene3D MFS general substrate transporter like domains 343 400 IPR036259 -
Ssu4g1234 411 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-7-RELATED 342 393 - -
Ssu4g1234 411 Pfam Sugar (and other) transporter 25 292 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu4g1234 411 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 411 IPR020846 GO:0022857
Ssu4g1234 411 CDD MFS_PhT 25 384 - -
Ssu4g1234 411 Gene3D MFS general substrate transporter like domains 20 342 IPR036259 -
Ssu4g1234 411 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-7-RELATED 1 338 - -
Ssu4g1234 411 SUPERFAMILY MFS general substrate transporter 12 325 IPR036259 -
Ssu4g1234 411 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 338 - -
Ssu4g1234 411 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 342 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1234 Ssu-Chr4 19640806 19642428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1234 1 384 Inorganic Solute Cotransporters AT2G38940 74.419 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1234 K08176 - gmx:100803626 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1234 4 19640806 19642428 Ssu4g1234 4 19640806 19642428 ECH
Ssu4g1234 4 19640806 19642428 Ssu7g3200 7 75980500 75988072 PCT
Ssu7g2219 7 43793700 43795268 Ssu4g1234 4 19640806 19642428 PCT