Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1231 ATGGTTGGTCTTTCCGATTGGACTGATCGAACAAGACAGTCCACAGCCCTCCAAGCATTGAGCCTAAAGGGTGCAAGCACTTTGTGGAAGAGGTCGACGGGGCAATCGCGGAGACATGCTTCCCTCTTCAGTATATTTCTTATGGTCGGTCTTTCCAACCAGACCGACCAAACAGGACAGTTCACAGCCCTCCAAATGCTAAGCCTAAAAGATAGTTTGGGTTTTGAAGCTGAAGGAGTAGTGATCAAAATGGGGAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCCAGAAGAAGATCAAATTCTCATCAATTTCATCAACACTTATGGCCATGCTAATTGGCGTGCACTGCCCAAGCTGGCTGGGCTGTTAAGGTGTGGAAAGAGTTGTAGACTCCGGTGGATAAATTATCTGAGGCCGGACATCAAACGGGGCAACTTTACCAGCGAAGAAGAGGACGCTATAATCAATTTGCATGAAAAGTTGGGAAATAGGTAA 516 0.4748 MVGLSDWTDRTRQSTALQALSLKGASTLWKRSTGQSRRHASLFSIFLMVGLSNQTDQTGQFTALQMLSLKDSLGFEAEGVVIKMGRAPCCEKMGLKRGPWTPEEDQILINFINTYGHANWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTSEEEDAIINLHEKLGNR 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1231 171 PANTHER TRANSCRIPTION FACTOR MYB14 84 171 - -
Ssu4g1231 171 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 148 IPR017930 -
Ssu4g1231 171 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 149 171 IPR017930 -
Ssu4g1231 171 Gene3D - 90 149 - -
Ssu4g1231 171 SUPERFAMILY Homeodomain-like 98 171 IPR009057 -
Ssu4g1231 171 CDD SANT 99 144 IPR001005 -
Ssu4g1231 171 Pfam Myb-like DNA-binding domain 97 144 IPR001005 -
Ssu4g1231 171 ProSiteProfiles Myb-like domain profile. 92 144 IPR001005 -
Ssu4g1231 171 SMART sant 96 146 IPR001005 -
Ssu4g1231 171 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 84 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1231 Ssu-Chr4 19568300 19570875 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1231 84 171 MYB Transcription Factor Family AT2G31180 87.500 8.69e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Ssu4g1231 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1231 K09422 - gmx:100802214 184.496