Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1226 ATGGGTTCGCTACATGGCCCACAAGTTCGAATACACTCTCTTAGCTTGAAGAGCTATAAAGGTCATCAACTTACAGATACAGCACGAAGTGACTTCATTTATAAGAGTATCTTGCTGAGAAAGTTGACTTACTTGTACAGGAATGAAGGAGACCAAGTGACTCCTGCTAGTATTGGAAAAGGAGAAACTCTTCTTGTTCGGAAATTACCAATTGCAGATCCAAAGCATGTCTCTGTAGGAGATTTAGTGGTCTTGAAAAACCCTGAGAAGGCAGATAACTATCTAGTCAGGCGATTAACTGCTATTGAAGGTTATGAAATGGTTTCAACTGACGACAAGGATGAACCCTTTGTTCTTGAGAAGGATCAATGTTGGGTAGAAGCtgaaaataaaagcttaaaacCCAAGGAAGCAAAGGACAGTCGATCATTTGGTCCAGTTAACATAACAGACATTGTAGGCAGAGTCCTTTATCGCCTGCGAACGTGTGTAGATCATGGCTGTGTACGGAACAGTCATTCCAGCATGCTAAAGGATTGGCCCGTGTTGGCAGTGGAACTTGATGTTGAGGAGATGTCAAAGAATCACAAGGCCTAG 597 0.4154 MGSLHGPQVRIHSLSLKSYKGHQLTDTARSDFIYKSILLRKLTYLYRNEGDQVTPASIGKGETLLVRKLPIADPKHVSVGDLVVLKNPEKADNYLVRRLTAIEGYEMVSTDDKDEPFVLEKDQCWVEAENKSLKPKEAKDSRSFGPVNITDIVGRVLYRLRTCVDHGCVRNSHSSMLKDWPVLAVELDVEEMSKNHKA 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1226 198 CDD S26_SPase_I 58 156 IPR019533 GO:0004252|GO:0006465
Ssu4g1226 198 PANTHER OSJNBA0068L06.9 PROTEIN 13 198 - -
Ssu4g1226 198 Gene3D Umud Fragment, subunit A 31 171 - -
Ssu4g1226 198 SUPERFAMILY LexA/Signal peptidase 60 160 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1226 Ssu-Chr4 19500470 19507606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1226 78 167 MADS-box Gene Family AT1G29960 31.250 2.65e-07 46.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1226 4 19500470 19507606 Ssu4g1226 4 19500470 19507606 ECH