Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1224 ATGCATATagGTCAAACAAATACAACTTCAGTGAAATGTCTTATCAACAGCATTTCTCGATTCATTCATCTAGTTTCTTGCCAAGCAGTGAAACCTATGCCCCTTCAGAAGAACTGTAATAATATGGTTGGTGTGTTGAAGCGTTTGAAACCAGTGTTTGATGATATTGTGGATTACAAAATCCCTTTGGATGAAAATCTGTATAGAGAATGTGAAGAATTGGATATGCAGGTTAATGAAGCTAGGGAGTTCATTGAAAAATGGGGCCCAAATATGAGCAAGATTCACAGTGTTCTTCAAAGTGGGGAATTGTTGATCAAGTTACAGAACTCTTCACATAAGATTTGTCACATGATAGTTAGATCCCTAAAGTCACCTGCATCTGTTTCAGTTTTGGCCAATCTTCAGCAATATATGCAGGAGCTTCAATGTCTTAAGAAGGAACCTGCAATGGTCTATATTGAAGAAGCACTGAGAAATCAAAGAGATAATATTGAACCTTGCTATGATCATCTAAAGGAAATTATAGGGTTACTCAAATTTACATCAAACCAGGAGCTCCTGAAAGAAAGTATTGCTGTGGAAAAGGAAAGGTCAAATGCTGAAGTCAATAAAACAAAAGGGGACTTGGATGAAATTAACCAATTTGTGAATCTTGTGTGCAATTTGCGTGATTATGTGATGAAAATTGAGCACCCTGGAGTCAAAAGTGGTGTCTCAATTCCCCCATACTTTCGATGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCAGGTCAGACATATGAAAGGCAATCCATTCAAAAGTGGCTTGATCATGGGCTAACTGTTTGTCCCAACACTCATCTGAGGCTTGTCCATACAAATCTCATTTCCAATTATACTGTTAAAGCTATGATAGCAAGTTGGTGTGAGGAAAATAATGTCAAACTTCAGAGTAATTCTAAGCACAGTAATTCTGCTCATACTTCATCCCCCTCAGATCATTTATTGCATCAAGATTTAGATTGTATGTGTAGCTTTGGGTCTTCAGATAGTAGCAATTCCAATTCAAATCAAACTGGAAATGCATTTGAGAAGCAAAAGGATGATAACTCTTTCAGATCAAGCAGGGAGTCCAATAGATGCCAGAATGGAGAGACAGAAAAGTTTGAGCAACAATCCCCTGCACCTTCATGTAGTAACAGCAGAAGTGAATCATTTTCAAGTTCTATTTCTAGTACCGATTATGTACTTCCAGTTTCAAAAGAGGTGTCAGGCATATCTACTAAGCACCAAAATGAGTTGTCTGGAGAAATTACTAATGGATGTCCTGCTTCTCGTGCATATAAAGAATCAGGGATTTATCCGTGGTTATCTGGAAAGCAATTTCATAGCCCTGGATCAAAAATTGGAAGGATggagaatgaaaataagtatagtgagaataataataatattattagtcaTTCAAAAGTTGATTCCCATCCTGTTTCCAATTTAGGATCTGATGAATTGATCACCACATTCCATGTCAATGAGTTGGTTGAAGACCTCCAGAGTCAATCCAATGAAAGACAAACTGCTGCTGCAGAAGAATTGAGGCTTCATACCAAGCATAACATGGAGAACCGTATCATTGTAGGGCAGTATGGGGCTATTATGCCTTTACTTTCACTGCTATATTCAGACAGGAACATAACACAAGAGCATGCTGTGACAGCTCTACTGAATTTGTCAATTAATGAAGGCAACAAGGCCTTGATTATGGAAGCAGGGGCCATAGAACCACTTATCCATGTTTTGCAGACAGGAAATGATGGCTCCAAGGAGAATTCTGCTGCTGCTCTGTTCAGCCTCTCTGTAATAGATAACAATAAGGCAAAAATTGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGATCTTCTAGCCTCAGGAACTCTTAGGGGAAAGAAGGATGCTGCTACTGCTTTATTCAACCTATCAATATTCCACGAGAATAAAGCTCGTATAGTTCAAGCTGGAGCTGTAAAGTTTCTGGTTCTGCTATTGGACCCTGCTGATGGAATGGTTGACAAGGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGCGGAGGgccaattagaaatcacaagGGAAGGGGGAATTCCCTTACTTGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATCCTCTTGCAACTCTGTCTTCATAGTCGAAAGTTTTGTACCCTGGTTCTCCAAGAAGGAGCTGTACCTCCCCTAGTTGCATTATCTCAGTCTGGTACTCCAAGGGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTCCGTAATCAGCGCAAAGGAGCTACGGGAAAGGGAAAATCATGA 2385 0.3895 MHIGQTNTTSVKCLINSISRFIHLVSCQAVKPMPLQKNCNNMVGVLKRLKPVFDDIVDYKIPLDENLYRECEELDMQVNEAREFIEKWGPNMSKIHSVLQSGELLIKLQNSSHKICHMIVRSLKSPASVSVLANLQQYMQELQCLKKEPAMVYIEEALRNQRDNIEPCYDHLKEIIGLLKFTSNQELLKESIAVEKERSNAEVNKTKGDLDEINQFVNLVCNLRDYVMKIEHPGVKSGVSIPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGLTVCPNTHLRLVHTNLISNYTVKAMIASWCEENNVKLQSNSKHSNSAHTSSPSDHLLHQDLDCMCSFGSSDSSNSNSNQTGNAFEKQKDDNSFRSSRESNRCQNGETEKFEQQSPAPSCSNSRSESFSSSISSTDYVLPVSKEVSGISTKHQNELSGEITNGCPASRAYKESGIYPWLSGKQFHSPGSKIGRMENENKYSENNNNIISHSKVDSHPVSNLGSDELITTFHVNELVEDLQSQSNERQTAAAEELRLHTKHNMENRIIVGQYGAIMPLLSLLYSDRNITQEHAVTALLNLSINEGNKALIMEAGAIEPLIHVLQTGNDGSKENSAAALFSLSVIDNNKAKIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPADGMVDKAVALLANLSTIAEGQLEITREGGIPLLVEIVESGSQRGKENAASILLQLCLHSRKFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQRKGATGKGKS 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1224 794 MobiDBLite consensus disorder prediction 365 383 - -
Ssu4g1224 794 Gene3D - 495 787 IPR011989 -
Ssu4g1224 794 CDD RING-Ubox_PUB 245 286 IPR045210 -
Ssu4g1224 794 SMART arm_5 661 700 IPR000225 GO:0005515
Ssu4g1224 794 SMART arm_5 579 619 IPR000225 GO:0005515
Ssu4g1224 794 SMART arm_5 620 660 IPR000225 GO:0005515
Ssu4g1224 794 SMART arm_5 538 578 IPR000225 GO:0005515
Ssu4g1224 794 SMART arm_5 701 741 IPR000225 GO:0005515
Ssu4g1224 794 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 316 IPR013083 -
Ssu4g1224 794 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Ssu4g1224 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 549 591 IPR000225 GO:0005515
Ssu4g1224 794 MobiDBLite consensus disorder prediction 352 407 - -
Ssu4g1224 794 MobiDBLite consensus disorder prediction 384 407 - -
Ssu4g1224 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 631 673 IPR000225 GO:0005515
Ssu4g1224 794 Coils Coil 509 529 - -
Ssu4g1224 794 SUPERFAMILY ARM repeat 508 781 IPR016024 -
Ssu4g1224 794 Pfam Armadillo/beta-catenin-like repeat 540 577 IPR000225 GO:0005515
Ssu4g1224 794 Pfam Armadillo/beta-catenin-like repeat 622 659 IPR000225 GO:0005515
Ssu4g1224 794 Pfam Armadillo/beta-catenin-like repeat 579 618 IPR000225 GO:0005515
Ssu4g1224 794 Coils Coil 184 204 - -
Ssu4g1224 794 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 672 713 IPR000225 GO:0005515
Ssu4g1224 794 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 789 - -
Ssu4g1224 794 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Ssu4g1224 794 Coils Coil 128 148 - -
Ssu4g1224 794 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Ssu4g1224 794 MobiDBLite consensus disorder prediction 770 794 - -
Ssu4g1224 794 SUPERFAMILY RING/U-box 239 315 - -
Ssu4g1224 794 PANTHER U BOX DOMAIN-CONTAINING 11 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1224 Ssu-Chr4 19483111 19487271 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1224 11 794 U-box Gene Family AT3G54790 52.778 0.0 701
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1224 - - gmx:100804684 1339.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1224 4 19483111 19487271 Ssu4g1224 4 19483111 19487271 ECH