Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1219 ATGCAATTATCATGCTCCATATTGAAGGCAGAGGGTATACCTGTATATCGTTGTGTTCAGTATCCTCGTGAGTTTGTTCTTGTCTTCCCCGGTGTGTATCGTTCAGGATTTGATTGTGGTTTCAACTGTTCTGAAGCAGCAAGTTTTGCTCCTCTTGAGTGGCTGCTTCACGGACAGAATGTTGTAGAGCTATATTGTGAACAGAGGAGAAAGACATTACTTTCATATGATAAGCTTTTAGTAGGAGCAGCAAGGGAAGCTGTGAGGGCCCAATGGGAAACTGATCTGTGCATGAAGAGCACATCAGACAGCTTAATACATAAAGATGCCTATCAAAAAAATGGTTTCTTAATAAAAGCTTTGAACTCTCGCATCCAGAGTGAAAGTTTGAAGAGGAAATTTCTTTGCACTTCTTTGGTATCACAAAGAATGGATGAAAATTTTGATGCCACTTGTAAAAGGGAATGTAGTATTTGCCTGCGTGATTTACACTTGTCTGCTATAGGGTGTTCATGTTCAGATGACAAGTTTGCGTGTCTTAATCATGCAAAAGATCTTTGTTCTTGCACTTGGAGCAACAAAATTCTCTTCTACCGCTATGAAATCAGTGATTTGAATGTTCTTTGTCAAGCTTTGGATGGAAAGTTAAGTGCAGTCTATAAATGGGCCAAAGAGGATCTTGGATTAACTCTGAACTCTGTTGCCACCAAGAGATCAAAACAAAGCCCAGAAAATGTAAGTGGTTCAATCGGCCCTTCACAAGACTTGCAGATGAAAGAGCCTATATCCCAGACAGCATCGGATGAATCCTCAAAGGGGAAACGACGTCAATTGCAGGAAATATTGAATTcatcaaaaaagaaacaaaatgaagtGGTTTTGAATTCatcaaagaagaaacaaaatgaagtGGTTTCCCAAGTCATGCGGAATTCCGGGGGCACTCACAGTAGTTCTTACTGA 963 0.3873 MQLSCSILKAEGIPVYRCVQYPREFVLVFPGVYRSGFDCGFNCSEAASFAPLEWLLHGQNVVELYCEQRRKTLLSYDKLLVGAAREAVRAQWETDLCMKSTSDSLIHKDAYQKNGFLIKALNSRIQSESLKRKFLCTSLVSQRMDENFDATCKRECSICLRDLHLSAIGCSCSDDKFACLNHAKDLCSCTWSNKILFYRYEISDLNVLCQALDGKLSAVYKWAKEDLGLTLNSVATKRSKQSPENVSGSIGPSQDLQMKEPISQTASDESSKGKRRQLQEILNSSKKKQNEVVLNSSKKKQNEVVSQVMRNSGGTHSSSY 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1219 320 MobiDBLite consensus disorder prediction 238 320 - -
Ssu4g1219 320 MobiDBLite consensus disorder prediction 283 320 - -
Ssu4g1219 320 MobiDBLite consensus disorder prediction 238 268 - -
Ssu4g1219 320 Gene3D Cupin 1 114 - -
Ssu4g1219 320 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 1 307 - -
Ssu4g1219 320 PANTHER LYSINE-SPECIFIC DEMETHYLASE 1 307 - -
Ssu4g1219 320 SUPERFAMILY Clavaminate synthase-like 10 92 - -
Ssu4g1219 320 ProSiteProfiles JmjC domain profile. 1 66 IPR003347 -
Ssu4g1219 320 Pfam JmjC domain, hydroxylase 6 49 IPR003347 -
Ssu4g1219 320 Pfam C5HC2 zinc finger 156 206 IPR004198 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1219 Ssu-Chr4 19410106 19411343 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1219 2 233 JUMONJI Transcription Factor Family AT1G08620 55.603 2.74e-88 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu4g1219 zf-C5HC2 8.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1219 - - gsj:114398457 560.836