Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1218 ATGccatcaattttgaattttgacccTCAAAAATCATTAATCATTCACGCGACTCCTCTTGTGATGATGGAAGCGAATTACGGAGATGATTGCACCAAATTTGAGAAGATAGAAAATCTTTCAGTTCCCCCTGGTTTTGCATCCCTAACATCTTTCATTTTGAAAAGGGGTGGAAATGTTAGGaaaattgataaatctacaaccTTTCCGATTGCATCTGAACAAGAGACAATCTGCATGGAGACTAAACCTGAGATGAGTGACATTACTGTTTATAACCAGGTTCTTATGCGTCGGCCGTGGATAATCTTGGACCAGAGCAACCACCACAAACCTGAGGAATCTCACACAGAGCATCTTCCTATGgaTCTCCCTCTAAATGCTGGTCGTCCAAAAGGGACCATACATGGATGTCCAAACTGCAGTAATTGTGTGAAGGTAACAGCAAGGTGGCATCCGGAGGATGCAAGAAGAGAAGTTCTGGAAGAAGCTCCTATTTTCCACCCAACAGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGTTCCAGAGCAGAACCTTATGGAATTTGCCGTATTGTCCCTCCTACTTGCTGGAAACCACCATGTTTTCTTGAGAACAAGATCATTTGGGAAAATTCTGAATTTGTTGCTCAGATTCAGAGAATTGATGGACACCAAGTTCAGCATGCACAAGATATTGTGGCTAGCTCTcatgaaaatacaaaaacaaagagaaaaagagatgtAAAAGTAGCTTTGAAGTCTCAGCTTGGTAATAGAAACACCAGCACCCCAAATGTCCAGAATGGTGAAGAATGTGACTGTGAGTCTGAACCTGGTCCCAAATTCAGTCTCAAAACATTTAAGAAATATGCAGATATATTTAAGAGCCAGTACTTCAATTACAAGGATAAGAATAAGATTATGGGTTCCAATATAAAAATAGCTATAAGTCAACAGCAGTGGGAACCATCTGTGGAGAATATCGAGGGTGAATATGGACGAATTGTTCAAAATCCAACTGAAGAAATCAAGGTGCTTTGTAGTAACACTTGGGAGGCTGGAGCTTTTAGCAGTGGATTTCCAACAGTTTCTGACCCTTTGGAGTCATGCACTTGTGCTGAATATTTGAAATCTGGATGGAACTTAAATAATATACTTTCGCTGTCAGGttcccttctttcttttgaaagCTCTGAAGCTACACATAATTTTTCCCCCAAGATTCATATGGGAATGTGCTTCTCTCCACTCAATTGGGTAATGCCATCTCTTTATTGCCTTATACTTGCATACAAATCACATATTTTTCAATATCTCTCTAATCTCTTAATGGTTTTCTGGGTGAATCTTCcagattaa 1374 0.3705 MPSILNFDPQKSLIIHATPLVMMEANYGDDCTKFEKIENLSVPPGFASLTSFILKRGGNVRKIDKSTTFPIASEQETICMETKPEMSDITVYNQVLMRRPWIILDQSNHHKPEESHTEHLPMDLPLNAGRPKGTIHGCPNCSNCVKVTARWHPEDARREVLEEAPIFHPTEEEFKDTLKYIASIRSRAEPYGICRIVPPTCWKPPCFLENKIIWENSEFVAQIQRIDGHQVQHAQDIVASSHENTKTKRKRDVKVALKSQLGNRNTSTPNVQNGEECDCESEPGPKFSLKTFKKYADIFKSQYFNYKDKNKIMGSNIKIAISQQQWEPSVENIEGEYGRIVQNPTEEIKVLCSNTWEAGAFSSGFPTVSDPLESCTCAEYLKSGWNLNNILSLSGSLLSFESSEATHNFSPKIHMGMCFSPLNWVMPSLYCLILAYKSHIFQYLSNLLMVFWVNLPD 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1218 457 SMART JmjN_1 163 204 IPR003349 -
Ssu4g1218 457 ProSiteProfiles JmjN domain profile. 164 205 IPR003349 -
Ssu4g1218 457 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 100 426 - -
Ssu4g1218 457 PANTHER LYSINE-SPECIFIC DEMETHYLASE 100 426 - -
Ssu4g1218 457 Gene3D Cupin 149 437 - -
Ssu4g1218 457 Pfam jmjN domain 165 198 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1218 Ssu-Chr4 19403931 19408921 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1218 31 436 JUMONJI Transcription Factor Family AT1G08620 39.759 1.38e-72 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu4g1218 JmjN 7.3e-17 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1218 - - gmx:100804864 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1218 4 19403931 19408921 Ssu4g1218 4 19403931 19408921 ECH