Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1217 ATGGGTCTCAGGGACATTGGTGCTTCACTGCCTCCTGGGTTTCGGTTTTATCCGAGTGATGAGGAATTGGTCTGTCATTACCTCTACAAAAAGATCGCAAATGAGGAAGTTCTGAAGGGCACCTTGGTAGAAATTGACCTGCACATATGCGAACCATGGCAACTTCctgAGGTGGCTAAGCTCAATGCAAACGAATGGTACTTCTTCAGCTTCAGGGACCGCAAATATGCGACCGGGTTTCGAACCAACCGGGCAACCATATCTGGGTACTGGAAAGCAACGGGGAAGGATCGTACGGTGCTGGATCCAACCACGCAAGAGGTTGTAGGGATGAGGAAAACATTGGTGTTCTATAGGAACAGGGCTCCAAATGGCATCAAAACCGGATGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAGGACTGGGTGTTGTGTAGAGTCTTCCACAAAAGCAAAGATGATAACAGTTCCAAACTCGGCACACAATTCGTGTATGAGACAACACCTCCATCCCTAACTTTGGCTTCGTCATCTCCGCCTAACCAAACCATGCCTGGTGGGTACAACAGACTTGCCTCTCTCTCTTCCTCGATGCCAACCCATCATCATTTCAACCCAAACCAAAACACCTCTTTGATGGATCTCCTTCAGTTCTCTCGGGAAACAAACACGAACAATAGCATTGTCGCTCAAATTAATTCCAAAGGTGATGATGGATATGGGTTCTTATGGGACATGGATCTAGAAGAAAATAGCCTAAGGGATGGCGTGGCTTCAAACATGGACGCAATAAGATTCGaggttgataataataatatggtatTGCTATGA 849 0.4605 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEEVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATISGYWKATGKDRTVLDPTTQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKDDNSSKLGTQFVYETTPPSLTLASSSPPNQTMPGGYNRLASLSSSMPTHHHFNPNQNTSLMDLLQFSRETNTNNSIVAQINSKGDDGYGFLWDMDLEENSLRDGVASNMDAIRFEVDNNNMVLL 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1217 282 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Ssu4g1217 282 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 279 - -
Ssu4g1217 282 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Ssu4g1217 282 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 279 - -
Ssu4g1217 282 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Ssu4g1217 282 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1217 Ssu-Chr4 19378056 19384745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1217 6 231 NAC Transcription Factor Family AT1G56010 46.610 5.15e-65 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu4g1217 NAM 3.8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1217 - - gmx:100806284 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1217 4 19378056 19384745 Ssu7g2231 7 44020350 44025103 PCT