Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1214 ATGGATTCTGCGAGGAGTTGGTTACAGAAGTTTCAACCGCGTGATAGACTAAGGGCCTCTACGAGGAAGAAGGATGATACTCATGTCGAAAACGAAGTTTCAAATGCACCTATGGATGAAGCAGCTCTTTCCAATATCACAAAACAGAAGGTTGCGGCAGCCAAGCAGTACATAGAAAACCACTACAAGGAACAAATGAAGAACCTTCAGGAGAGGAAGGAGCGCCGAACCATCTTGGAAAAGAAGTTGGCTGATGCTGATGTCTCTGAAGAAGATCAAAATAACCtacttaaatttttagagaaaaaagaaactgAATATATGCGTCTTCAAAGACACAAAATGGGTGTTGATGATTTTGAGTTATTGACTATGATTGGAAAAGGTGCATTTGGGGAGGTCAGAGTATGTAAGGAAAAGACGACAGGTCATGTATATGCAATGAAAAAGCTAAAGAAATCAGAGATGCTTCGCAGAGGCCAGgTAGAACATGTCAAAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTATGCTTTATTGTTCTTTTCAGGATGATGAGTATCTGTATCTTATTATGGAGTATCTACCGGGTGGGGATATGATGACTCTACTCATGAGAAAAGATACATTGACTGAAGATGAAGCCCGATTTTATGTGGGACAAACAGTTTTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAACTTATTACTTGATAGATATGGACACTTGAGATTATCAGATTTTGGACTATGTAAGCCATTAGATTGTAGTACACTTGAAGAAACAGATTTTTCTACGAGTCAAAATGCGAATGGATTTACACAGAACGATGAACATGCAACTCCAAAACGCACACAACAAGAACAGTTACAACACTGGCAAAATAATAGGAGGACACTCGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTAAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTACGAAATGTTAGTGGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAagATAGTAAATTGGAAATCTCACTTAAAATTTCCTGAAGAAGTAAGGTTATCTCTAGAGGCTAAAGATCTTATAAGTAAGCTTTTGTGTAATGTCAACCAAAGGTTGGGCTCAAATGGTGCAGATGAAATAAAGACTCATTCATTCTTTAACGGTGTTGAATgggaaaaattatatcaaatggaAGCTGCATTTATTCCTGAGGTCAATGATGAGTTAgatactcaaaattttgaaaagtttgaagAGTCCGACAATCAAACTCATTCATCATCAAGAGCTGGTCCATGGAGAAAGATGCTTTCATCTAAAGACCTAAATTTTGTGGGATACACTTACAAGAACTTTGAAATTATCAATGATTATCAAGTTCCTGGAATGGCTGAATTGAGGAAGAAAACCCCTAAATCAAAGAGGCCATCTGTCAAGTCCCTATTTGATTGCGAGTCTGAGACATCTGAAGTGTCTGAGGCTTCAGATTCATCTGCAAACATAACTAGGAAGTCTGATGATCTACCTACTCAGTCAGAATAG 1638 0.3651 MDSARSWLQKFQPRDRLRASTRKKDDTHVENEVSNAPMDEAALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCKEKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVMLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGQTVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTLEETDFSTSQNANGFTQNDEHATPKRTQQEQLQHWQNNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEVRLSLEAKDLISKLLCNVNQRLGSNGADEIKTHSFFNGVEWEKLYQMEAAFIPEVNDELDTQNFEKFEESDNQTHSSSRAGPWRKMLSSKDLNFVGYTYKNFEIINDYQVPGMAELRKKTPKSKRPSVKSLFDCESETSEVSEASDSSANITRKSDDLPTQSE 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1214 545 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Ssu4g1214 545 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu4g1214 545 MobiDBLite consensus disorder prediction 9 31 - -
Ssu4g1214 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 522 - -
Ssu4g1214 545 Coils Coil 62 82 - -
Ssu4g1214 545 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Ssu4g1214 545 MobiDBLite consensus disorder prediction 514 545 - -
Ssu4g1214 545 SUPERFAMILY Protein kinase-like (PK-like) 93 471 IPR011009 -
Ssu4g1214 545 MobiDBLite consensus disorder prediction 499 545 - -
Ssu4g1214 545 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1214 545 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1214 545 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Ssu4g1214 545 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Ssu4g1214 545 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 28 522 - -
Ssu4g1214 545 MobiDBLite consensus disorder prediction 1 31 - -
Ssu4g1214 545 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1214 545 MobiDBLite consensus disorder prediction 499 513 - -
Ssu4g1214 545 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Ssu4g1214 545 CDD STKc_NDR_like 118 482 - -
Ssu4g1214 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1214 Ssu-Chr4 19274303 19282767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1214 1 514 AGC Kinase Gene Family AT2G20470 78.011 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Ssu4g1214 Pkinase 8.7e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1214 K08790 - gmx:100805940 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1214 4 19274303 19282767 Ssu4g1214 4 19274303 19282767 ECH
Ssu4g1214 4 19274303 19282767 Ssu7g3224 7 76738480 76750204 PCT
Ssu7g2238 7 44135671 44145281 Ssu4g1214 4 19274303 19282767 PCT