Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1213 ATGGCTATCGATCTTCTTGGACCAAGTCTGGAAGATTTGTTCAATTATTGCAACCGGAAGTTAACATTGAAGACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCTAGAGGTTTCCTTCACCGTGACATTAAGCCAGACAATTTTTTAATGGGCCTAGGACGTAAAGCAAACCAgGTGTACGTCATTGACTATGGCCTTGCTAAAAAATATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATCGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGtcttCCTTGGCAGGGATTGAAGGCTGGCACCAAAAagcaaaaatatgataaaatcaGTGAGAAGAAAATGTCAACTCCTATAGAGGTGCTCTGCAAATCATATCCCTCAGAGTTTGTATCATATTTTCACTACTGCCGATCGTTGCGGTTTGAGGACAAGCCTgattattcatatttaaagaGGCTTTTTCGAGATTTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGATTGGACTATATTGAAGTATCCACAGATTGGTGGCAGCTCTAGAGGGCGGCATGACAGTGGCAAGGCAGCTATGCACGCAGGACCATCTGTACAAAAGCCAGAAAAGATATCAGTTGGGAAAGAGATTCGAGAAAAATTCTCTGGTGCTGTTGAAGCTTTCTCTCGGAGGAACCCAACAAGTTCTAGTCCTCGTGGTGATCACTCCAAACATAGGAGTTTTGAGGAAGCAGCAGTACACAAGGATGTGTATCATGATCAAGAGAAGGGACGCAATTCGTCTCGATATGGCAGCAGTTCAAGAAGAGCCATAATCTCATCATCAACCAGGCCAAGTTCCTCTGGTGATCATACTGACAGTCGTACCGGCCGGCTAACCTCAAGTGGTAGCCGTCCATCTCCTGCGCATAGAAATATTCAACCTATATATGAGACCAAACAACCAACTTATGCACGCTCTGGATCTACCAGAGGCAACCGCGATGATCCTCTGCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1152 0.421 MAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYVIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSRGRHDSGKAAMHAGPSVQKPEKISVGKEIREKFSGAVEAFSRRNPTSSSPRGDHSKHRSFEEAAVHKDVYHDQEKGRNSSRYGSSSRRAIISSSTRPSSSGDHTDSRTGRLTSSGSRPSPAHRNIQPIYETKQPTYARSGSTRGNRDDPLRSFELLSIRK 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1213 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672|GO:0006468
Ssu4g1213 383 MobiDBLite consensus disorder prediction 272 301 - -
Ssu4g1213 383 PANTHER CASEIN KINASE-RELATED 1 372 - -
Ssu4g1213 383 Gene3D Transferase(Phosphotransferase) domain 1 1 257 - -
Ssu4g1213 383 MobiDBLite consensus disorder prediction 367 383 - -
Ssu4g1213 383 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 372 - -
Ssu4g1213 383 MobiDBLite consensus disorder prediction 246 260 - -
Ssu4g1213 383 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1213 383 SMART serkin_6 1 208 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1213 383 Pfam Protein kinase domain 12 148 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1213 383 MobiDBLite consensus disorder prediction 302 365 - -
Ssu4g1213 383 MobiDBLite consensus disorder prediction 222 383 - -
Ssu4g1213 383 SUPERFAMILY Protein kinase-like (PK-like) 3 211 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1213 Ssu-Chr4 19237578 19241939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1213 12 202 MAP Kinase Kinase Kinase AT1G62400 28.934 1.33e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Ssu4g1213 Pkinase 1.6e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1213 K08960 - gmx:100807882 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1213 4 19237578 19241939 Ssu4g1213 4 19237578 19241939 ECH
Ssu4g1213 4 19237578 19241939 Ssu7g2240 7 44187614 44195098 PCT