Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1204 ATGGGGAGTAGGGTTAGGCAGGGGAGGAGATTGCAGAAGATGATGACGTGTCTGTGCCAGGGGGTGCCGTTAAAAGGAGAAGATGAAACGGTTCCTTCTTCGGAATCTCTTGCAATCAGGGAGTTTTATTCTTCAACAGCAAGTGGGCGTTCTCGCCTAGATGGAGAAATTGAGATGGGGTCTGATTCCGGTAACATAGATGAAGCCGAATTGTCCTTGCGTGAGAGTGGCATCTTGGACAATGAGGAAGCTACAGCTTTGTTAGGAAGAGATGAATATCAGCAAGGGAATATAGAAGCTGCTTTGCGTGTTTATGAGAGAATAAATATAGGTGCTGTGACTCCCAGGATGAGAATTTCCCTTGCCAAAAGCAGAGAACGCCGTAAGAAACATTCCCATTATTATGCTGCTCCCCCAATGTCCATATACACGGCTGGATTGCTGTTGGAAGCAATTTTCCTGAAAGCAAAATGTTTGCAGGTTCTAGGGAGGTTTAAAGAAGCTGCCCAAACTTGTAAAGTTATTCTGGACGTAGTTGAGTCTTCATCACCTGAAGGCTTGCCTCAAAACTTTGGCAATGAGTATAAATTGCAGGAGACTTTGAGTAAGGCAGTTGAGCTACTTCCAGAATTGTGGAAACTTGCTGATTCCCCACGTGAAGTTATCTTGTCTTACCGGCGTGCAATCCTTCACCAATGGAATCTTGATGCAAAGATCATAGCAAAGATTCAGAAagaatttgttgtttttcttctatataGTGAAGGGGAAGCAATCCCCTCAAATCTTCGTTCCCATATGGACAGCTCGTTTGTACCCAAAAACAACTTAGAAGAGGCTATActtcttttaatgattttgctAAGAAAAATATCcctaaataaaattgagtggGATCCGTCAATTTTGGACCACCTTTCATTTGCTCTATCTGTTTCAGGGGATTTGTCAACTTTAGCCAATCAATGGGAAGAATTACTCCCTGGAACTATCAATCGAAGAGAAAGGTACCAAGCCCTTGCTCTTTGTTATTATGGCGCAGGTAATGACTTGGTAGCACTGAATCTTCTTAGGAAATTGTTGAGTAGTAGAGAGGACCCAAATCATGTTCCTGCTTTGTTAATGGCTTCCAAGATATGTTGTGAGCACCCTGATCTTGCAAAAGATGGGGCAAGCTTAGCTCACAGAGTGCTTGAGAACTTGGATGGAAAATGTTATCAGTTGGAAAGTCTTGCCAGCTGCTTACTTGGTGTTTCACTTTCAGGCACACTCAAAATTTGCCATTTCTAA 1290 0.4124 MGSRVRQGRRLQKMMTCLCQGVPLKGEDETVPSSESLAIREFYSSTASGRSRLDGEIEMGSDSGNIDEAELSLRESGILDNEEATALLGRDEYQQGNIEAALRVYERINIGAVTPRMRISLAKSRERRKKHSHYYAAPPMSIYTAGLLLEAIFLKAKCLQVLGRFKEAAQTCKVILDVVESSSPEGLPQNFGNEYKLQETLSKAVELLPELWKLADSPREVILSYRRAILHQWNLDAKIIAKIQKEFVVFLLYSEGEAIPSNLRSHMDSSFVPKNNLEEAILLLMILLRKISLNKIEWDPSILDHLSFALSVSGDLSTLANQWEELLPGTINRRERYQALALCYYGAGNDLVALNLLRKLLSSREDPNHVPALLMASKICCEHPDLAKDGASLAHRVLENLDGKCYQLESLASCLLGVSLSGTLKICHF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1204 429 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 7 426 - -
Ssu4g1204 429 Gene3D Tetratricopeptide repeat domain 55 416 IPR011990 GO:0005515
Ssu4g1204 429 PANTHER PROTEIN NPG1 7 426 IPR043376 -
Ssu4g1204 429 SUPERFAMILY TPR-like 82 362 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1204 Ssu-Chr4 19119242 19121666 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1204 15 427 Calmodulin-binding Proteins AT4G28600 54.545 1.87e-144 427
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1204 K21843 - gmx:100784353 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1204 4 19119242 19121666 Ssu4g1204 4 19119242 19121666 ECH
Ssu4g1204 4 19119242 19121666 Ssu7g2246 7 44324117 44329970 PCT