Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1203 ATGGAGGTGGAAATATGGCATGATCTTGCTTATGTATACATAAGTCTCTCACGGTGGCATGATGCAGAGGTGTGTCTTTCGAAATCTAAGGCCATCAAACTATACTCTGCTTCTAGATGTCATGCAATAGGTACAATGTACGAAGCAAAGGGTCTTTACAAAGAGGCTTTAAAAGCTTTTTGTGATGCTTTGAACACTGATCCCGGACATGTCCCTAGCTTGATCTCTACTGCGGTGGTTCTTAGACGGTGCAGTAATCGATCAAATCCTGCTATCAGAAGCTTTCTGATGGATGCACTACGGCATGACAGATTTAACGCTTCTGCTTGGCTTAATCTTGGCATTTTTCTCAAGGATGAGCGCACAATGCTAGAAGCTGCAGAATGTTTTGAGACAGCAAACTTTCTTGAAGAATCGGCTCCAGTTGAACCTTTCAGATGA 441 0.4286 MEVEIWHDLAYVYISLSRWHDAEVCLSKSKAIKLYSASRCHAIGTMYEAKGLYKEALKAFCDALNTDPGHVPSLISTAVVLRRCSNRSNPAIRSFLMDALRHDRFNASAWLNLGIFLKDERTMLEAAECFETANFLEESAPVEPFR 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1203 146 SUPERFAMILY TPR-like 4 133 IPR011990 GO:0005515
Ssu4g1203 146 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 1 146 - -
Ssu4g1203 146 SMART tpr_5 107 140 IPR019734 GO:0005515
Ssu4g1203 146 SMART tpr_5 3 36 IPR019734 GO:0005515
Ssu4g1203 146 SMART tpr_5 37 70 IPR019734 GO:0005515
Ssu4g1203 146 Gene3D Tetratricopeptide repeat domain 2 141 IPR011990 GO:0005515
Ssu4g1203 146 PANTHER PROTEIN NPG1 1 146 IPR043376 -
Ssu4g1203 146 Pfam Tetratricopeptide repeat 38 69 IPR019734 GO:0005515
Ssu4g1203 146 ProSiteProfiles TPR repeat profile. 37 70 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1203 Ssu-Chr4 19117102 19118697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1203 1 146 Calmodulin-binding Proteins AT4G28600 54.000 2.70e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1203 K21843 - gmx:100809498 278.485