Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1193 ATGACTAGTTTTCAAAAGGTTCATGCCCTTCTCTTCCATATACTGTTGATATCTTTGCTTCCATTGAAAATCACCTCATCACCAAGAACGGAAGCAGAAGCCCTTGTCAAATGGAAAAATAGTCTATcccctcctcttcctctctctctaaacTCATGGTCCCTCACCAACCTTGGCAACCTTTGCAATTGGGATGCCATTGTTTGTGACAACACTAACACAACAGTCTCAGAGATAAACTTCTCTGGTGCCAATCTCACCGGGACTCTCACTGGCTTGGATTTTGCTTCCCTCCCTAACCTCACTCAACTCAGCCTCAATGGCAACAACTTTGGGGGGTCAATACCATCAACAATTGGTAACCTCTCCAAGCTCACTTTATTGGATTTGGGTAACAACTTATTTGAAGACACACTGCCTAATGAGCTAGGCCAGCTAAGGGAGCTTCAATATCTTAGCTTTTACAACAACAATCTCAATGGCACCATTCCTTATCAGCTCATGAATCTCCCTAAGGTATGGTACATGGACCTTGGATCAAACTACTTTATAACTCCTCCTGATTGGTCTCAATATTCAGGCATGCCTTCCTTAACTCACCTTGCTTTGGATCTCAATGAATTTACTGCTGAGTTCCCAAGTTTCATACTGGAGTGCCAGAACTTGACATACCTTGACATCTCTCAGAATAGCTGGAATGTCACAATACTAGAATCCATATATAGCAATTTGGGCAAGCTGGAATACCTCAACCTCACCAATTGTGGGCTAGAAGGAAAACTGTCACCCAACTTGTCCTTGCTTTCTAATCTCAAAGAACTTCGAATAGGTAATAACATGTTTAATGGTTCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAATTTCTTGAATTGAATAACATTTCTGCCCATGGGAAAATTCCTTCTTCCGTAGGCCAACTCAGGGAGCTATGGCATCTTGATctcagtaataatttttttaactctacaaTCCCTTCTGAGCTTGGCCTATGCACAAATCTAACCTTTTTGAGTCTAGCGTTGAATAGTTTGACCGGTCCTTTGCCTATGTCCTTAGCTAATCTGGCTAAAATATCAGAATTAGGATTATCAGATAATTCCTTTTCTGGTCAACTTTCAGCTTCACTCATCTCTAATTGGACCCAGTTGATCTCCTTGCAAGtccaaaacaataaatttacaGGAAATATTCCTCCACAGATTGGcctgttgaaaaaaattaacttcctCTATCTGTACAATAATCTGTTCTCTGGTTCCATTCCTGTAGAGATTGGAAACCTGAAGGAAATGATAGAGTTAGACCTTTCACAAAACCAATTCTCTGGTCCAATTCCATCAACACTTTGGAATCTGACAAACGTTCAAGTCGTCAATCTTTTCTTCAATGTGCTCTCTGGAACCATTCCCTTGGATATTGGAAACTTAACCTCACTGCAAATCTTTGATGTGAACACCAATAACTTGTTTGGGGAGTTGCCAGAGACCATAGCTCAACTAACTGCTTTAAGAAATTTTTCTGTGTTCACCAATAACTTCACTGGCAGCATTCCAAGAGAATTTGGAAAGAGTAATCCTTCTTTGACTCATGTCTACCTTTCAAACAACAGCTTCTCTGGAGAACTGCCCCCTGACTTGTGCAGTGATGGCAAGCTAATTATTTTGGCAGTCAATAACAACAGCTTTTCAGGGACATTGCCAAAGTCCTTGAGAAGTTGTTTATCATTAACTAGAGTTCGGCTTGATGATAATCAGTTCACTGGAAACATCACAGACGCATTTGGGGTACTCCCAAATCTTGTTTTCATCTCACTTAGTGGAAATCAGCTTGTTGGTGAGCTCTCCCCGGAGTGGGGTGAATGTGTCAACTTAACTCGGATGGATATGGGAAGCAACAAACTTTCTGGAAAAATTCCATCTGAGCTAAGCAAGTTGAGTCAATTAAGGTATTTGAGCCTTCACTCCAATGATTTCACTGGCAGTATCCCACCTGAAATTGGAAATCTAGGCCTGCTTTTCATGTTCGACTTGAGTGGTAACCATTTATCAGGAAAAATCCCAAAGAGTTATGGTAGATTGGCTCAGCTAAATGATCTTGATTTATCAAATAACAACTTCAGTGGAAGCATTCCTAGAGAGCTCAGTGATTGTAATCGCTTACTGAGTCTGAATTTAAGCCATAACAATCTATCAGGGGAGATACCATATGAACTTGGCAATCTGTTCTCACTCCAATACTTGTTGGACCTCAGCAGCAACTCTCTCTCGGGGGCTCTTCCCCAAAACCTTGAAAAGTTAGCATCATTGCAGATTCTCAATGTCTCACACAACCATCTGTCAGGGACAATCCCACAATCATTTTCAAGCATGCTCAGCCTTCAATCTATTGATTTTTCTTACAACAACTTGAGTGGTTCAATCCCCACAGGTGGTGTTTTCCAGACAGCAACTGCTGAAGCCTATGTTGGGAACTCAGGTTTGTGTGGTGAGGTAAAAGGATTAACTTGCCCCAAAGTATTTTCCCCAGACAAATCTGGAGGGGTTAACAAAAAGGTTCTTCTTGGTGTTATCATACCAGTTTGTGGCTTATTTATTGGGATGATTGGTGTTGGAATCCTATTATGCCGGCAGCATGCCAAAAAACGCCTTGGTGAAGAGTCCAAAAGCATTGAAAAAAGTGATCAGTCTGTTAGCATGGTGTGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGCGAAGGCCACCGATGACTTCAATGACAAGTACTGCATTGGAAAGGGAGGATTTGGAAGTgtttatagagcacaattactCACAGGTCAAGTTGTAGCTGTTAAGAGGCTCAATATATCAGACTCTGATGACATTCCAGCAGTGAACCGCCAAAGCTTTCAGAATGAGATAAAATCACTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGGTTCTGTTCTAGAAGGGGACAAATGTTCTTGGTTTATGAACATGTAGACAAAGGAAGCTTGGGGAAAGTATTGTATGGAGAGGAAGGAAAATTGGAGCTAAGATGGGCTACAAGGCTGAAAATTGTGCAGGGAATAGCCCATGCAATTTCATACCTGCACACTGACTGCTCCCCAACAATTGTCCACCGGGATATAACATTGAATAACATACTACTAGACTCAGACTTGGAACCTCGTCTTGCAGATTTTGGCACAGCAAAACTGCTAAGCTCCAACACTTCAACCTGGACCTCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAACTAGCACAAACTATGAGGATCACTGACAAGTGTGACGTGTATAGTTTTGGAGTGGTGGTGTTGGAGATAATGATGGGAAAGCATCCTGGAGAACTCTTGGCTACGCTGTCTTCAAACAAGTATTTGTCATCAATGGAGGAACCACAGGTGCTACTGAAGGATGTGCTTGACCAACGGCTTCCCCCTCCAATGGGCCAATTAGCAGAAGCAGTAGTGTTCACAGCGACCATAGCTTTGGCATGCACACGTACGGCTCCAGAGTCCAGACCTGTGATGCGTTCTGTGGCACAAGAACTGGCGGCTACTACGCAGGCTTGTCTTGCCGAGCCGTTTGGCATGATAACCATAAGCAAGCTTACAGGGTTCCAGAAATAA 3684 0.4131 MTSFQKVHALLFHILLISLLPLKITSSPRTEAEALVKWKNSLSPPLPLSLNSWSLTNLGNLCNWDAIVCDNTNTTVSEINFSGANLTGTLTGLDFASLPNLTQLSLNGNNFGGSIPSTIGNLSKLTLLDLGNNLFEDTLPNELGQLRELQYLSFYNNNLNGTIPYQLMNLPKVWYMDLGSNYFITPPDWSQYSGMPSLTHLALDLNEFTAEFPSFILECQNLTYLDISQNSWNVTILESIYSNLGKLEYLNLTNCGLEGKLSPNLSLLSNLKELRIGNNMFNGSVPTEIGLISGLQFLELNNISAHGKIPSSVGQLRELWHLDLSNNFFNSTIPSELGLCTNLTFLSLALNSLTGPLPMSLANLAKISELGLSDNSFSGQLSASLISNWTQLISLQVQNNKFTGNIPPQIGLLKKINFLYLYNNLFSGSIPVEIGNLKEMIELDLSQNQFSGPIPSTLWNLTNVQVVNLFFNVLSGTIPLDIGNLTSLQIFDVNTNNLFGELPETIAQLTALRNFSVFTNNFTGSIPREFGKSNPSLTHVYLSNNSFSGELPPDLCSDGKLIILAVNNNSFSGTLPKSLRSCLSLTRVRLDDNQFTGNITDAFGVLPNLVFISLSGNQLVGELSPEWGECVNLTRMDMGSNKLSGKIPSELSKLSQLRYLSLHSNDFTGSIPPEIGNLGLLFMFDLSGNHLSGKIPKSYGRLAQLNDLDLSNNNFSGSIPRELSDCNRLLSLNLSHNNLSGEIPYELGNLFSLQYLLDLSSNSLSGALPQNLEKLASLQILNVSHNHLSGTIPQSFSSMLSLQSIDFSYNNLSGSIPTGGVFQTATAEAYVGNSGLCGEVKGLTCPKVFSPDKSGGVNKKVLLGVIIPVCGLFIGMIGVGILLCRQHAKKRLGEESKSIEKSDQSVSMVWGRDGKFTFSDLAKATDDFNDKYCIGKGGFGSVYRAQLLTGQVVAVKRLNISDSDDIPAVNRQSFQNEIKSLTGVRHRNIIKLYGFCSRRGQMFLVYEHVDKGSLGKVLYGEEGKLELRWATRLKIVQGIAHAISYLHTDCSPTIVHRDITLNNILLDSDLEPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRITDKCDVYSFGVVVLEIMMGKHPGELLATLSSNKYLSSMEEPQVLLKDVLDQRLPPPMGQLAEAVVFTATIALACTRTAPESRPVMRSVAQELAATTQACLAEPFGMITISKLTGFQK 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1193 1227 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Ssu4g1193 1227 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Ssu4g1193 1227 Gene3D Ribonuclease Inhibitor 287 384 IPR032675 -
Ssu4g1193 1227 Pfam Leucine Rich Repeat 777 798 IPR001611 GO:0005515
Ssu4g1193 1227 Pfam Leucine Rich Repeat 246 266 IPR001611 GO:0005515
Ssu4g1193 1227 Pfam Protein kinase domain 930 1137 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 29 174 - -
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 536 1202 - -
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 306 416 - -
Ssu4g1193 1227 SUPERFAMILY L domain-like 46 379 - -
Ssu4g1193 1227 ProSitePatterns Protein kinases ATP-binding region signature. 934 956 IPR017441 GO:0005524
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 180 311 - -
Ssu4g1193 1227 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1054 1066 IPR008266 GO:0004672|GO:0006468
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 415 529 - -
Ssu4g1193 1227 SMART LRR_typ_2 316 340 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 437 461 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 775 798 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 485 509 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 98 121 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 535 558 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 606 630 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 268 292 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 654 678 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 702 726 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 122 146 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 799 824 IPR003591 -
Ssu4g1193 1227 SMART LRR_typ_2 195 219 IPR003591 -
Ssu4g1193 1227 Gene3D Ribonuclease Inhibitor 385 531 IPR032675 -
Ssu4g1193 1227 Gene3D Ribonuclease Inhibitor 532 849 IPR032675 -
Ssu4g1193 1227 CDD STKc_IRAK 934 1202 - -
Ssu4g1193 1227 SUPERFAMILY Protein kinase-like (PK-like) 908 1202 IPR011009 -
Ssu4g1193 1227 Gene3D Ribonuclease Inhibitor 188 286 IPR032675 -
Ssu4g1193 1227 ProSiteProfiles Protein kinase domain profile. 928 1215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1193 1227 Gene3D Transferase(Phosphotransferase) domain 1 1009 1212 - -
Ssu4g1193 1227 SUPERFAMILY L domain-like 534 825 - -
Ssu4g1193 1227 Gene3D Phosphorylase Kinase; domain 1 888 1008 - -
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 29 174 - -
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 536 1202 - -
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 306 416 - -
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 415 529 - -
Ssu4g1193 1227 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 180 311 - -
Ssu4g1193 1227 SUPERFAMILY RNI-like 286 619 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1193 Ssu-Chr4 19006858 19010655 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1193 31 648 Receptor kinase-like Gene Family AT4G08850 31.129 3.00e-72 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu4g1193 Pkinase 2.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1193 - - gmx:100809137 2082.37