Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1191 ATGGAAGCACGTCCTGCTTTCTCTATTGAAAGATCAAGTGCTAAGCAACTCAATAACACGGGCATGTCTGAAGCACTTCCTTCATCGTTGCCTCTCCTTCCAACGCCTCTAGAAGAGACATACCCCAAATTATCTGATTCTCAGCCAGCTTTTATGGAAAAAGAGCTTAAAACAAAACCTTTTACTCATTCAGGTCATTTATCTTCCAGCGGAGCAGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCAACTGATCTTCACCACTCATCCTTTTCATCTCATGAAAAACACCCTAGAAATACTCATTTTATTTCACAGTCTTTGAGTAACATGGCGTCATTGCCATTATCTTATTCCTCTAATAGTGGACCAATACCTTCTACAACATCAACCCCTTATTCCAATGGAAACAGTGTTTCCTGGAATACAGATTCCCTGCCTAGCTTTCTTGATTTCCCTGCCAATACCTCCGTTGATAATTGTCGAGTAGAAAGCAGTGCCTGCAATATTATGGCAACTGAAGAGTATTCTAAGCGAAATGATTGGCAGGAGTGGGCTGACCAGTTAATCAGTGATGATGATCCTTTGACTTCTAATTGGAATGATCTTCTTGCGGACAACATTCAAGATCTTGAACCAAAgGTCTCAAAATCATCTTCACAACTTCCAATAGGACACCAATCCCAAAGCCATCAACAACTTCCTGCTTCATTTGGAGAAAATCGTGTTGGTGTTGCCCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGCCACGGATGCGCTGGACACCCGAGCTTCATGAGGCATTTGTGGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCCGAGTCATCTGAAGGAGCTGCAGAGAAAAAACTAAGTCCAATTGAAGAGAGGTCATCTCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAAAAGCAGTGCAAATCTGGCATTGAAACATTTAAGGCATCATCGTCTGCCATCGAGAGTCCATCTGGAGTGTCTTCTGATGCCATTAAAGATTCTCCAGCCAAAACTGAATTAGAAACCATCAAAGTGGACCATGGCAAGTCAGGACCTGATCAAGCTATGTCAGTACCGCAGTTGAGGAGGAAAGGTCATTGGAAGTGA 1353 0.4257 MEARPAFSIERSSAKQLNNTGMSEALPSSLPLLPTPLEETYPKLSDSQPAFMEKELKTKPFTHSGHLSSSGAVGHMFSSSPGYSTDLHHSSFSSHEKHPRNTHFISQSLSNMASLPLSYSSNSGPIPSTTSTPYSNGNSVSWNTDSLPSFLDFPANTSVDNCRVESSACNIMATEEYSKRNDWQEWADQLISDDDPLTSNWNDLLADNIQDLEPKVSKSSSQLPIGHQSQSHQQLPASFGENRVGVAPSSSANSAPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEERSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGIETFKASSSAIESPSGVSSDAIKDSPAKTELETIKVDHGKSGPDQAMSVPQLRRKGHWK 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1191 450 Pfam Myb-like DNA-binding domain 260 311 IPR001005 -
Ssu4g1191 450 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 258 312 IPR006447 GO:0003677
Ssu4g1191 450 MobiDBLite consensus disorder prediction 1 43 - -
Ssu4g1191 450 MobiDBLite consensus disorder prediction 403 450 - -
Ssu4g1191 450 Coils Coil 346 366 - -
Ssu4g1191 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 25 422 IPR044848 GO:0003700
Ssu4g1191 450 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 255 315 IPR017930 -
Ssu4g1191 450 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL4-RELATED 25 422 - -
Ssu4g1191 450 MobiDBLite consensus disorder prediction 11 26 - -
Ssu4g1191 450 Pfam MYB-CC type transfactor, LHEQLE motif 343 390 IPR025756 -
Ssu4g1191 450 SUPERFAMILY Homeodomain-like 256 312 IPR009057 -
Ssu4g1191 450 Gene3D - 257 316 - -
Ssu4g1191 450 MobiDBLite consensus disorder prediction 416 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1191 Ssu-Chr4 18988459 18993134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1191 1 436 G2-like Transcription Factor Family AT4G28610 49.438 1.58e-113 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu4g1191 Myb_DNA-binding 8.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1191 - - gmx:100810560 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1191 4 18988459 18993134 Ssu4g1191 4 18988459 18993134 ECH
Ssu7g2252 7 44410149 44412495 Ssu4g1191 4 18988459 18993134 ECH
Ssu4g1191 4 18988459 18993134 Ssu7g2252 7 44410149 44412495 PCT