Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1188 ATGTTTGATGTTTCAGGTCGCGGTGGATCGGCGGGGAACAAGTTCAGGATGTCACTGGGTCTGCCGGTGGCGGCGACGGTGAACTGCGCCGACAACACGGGCGCGAAGAACCTCTACATCATATCGGTGAAGGGGATCAAGGGTAGGCTGAACCGGTTGCCGTCGGCGTGCGTTGGAGACATGGTCATGGCCACCGTCAAGAAGGGAAAGCCCGATCTCCGTAAGAAGGTGCTGCCCGCCGTTATCGTCCGTCAGCGCAAGCCGTGGCGCCGAAAGGACGGCGTTTACATGTACTTCGAAGATAATGCTGGTGTCATCGTGAATCCCAAGGGTGAAATGAAAGGTTCTGCTATTACTGGTCCAATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCAAGTGCTGCCAATGCTATTGTTTAA 426 0.554 MFDVSGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1188 141 PANTHER 60S RIBOSOMAL PROTEIN L23 6 141 - -
Ssu4g1188 141 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 6 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu4g1188 141 Pfam Ribosomal protein L14p/L23e 23 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu4g1188 141 ProSitePatterns Ribosomal protein L14 signature. 80 106 IPR019972 -
Ssu4g1188 141 SMART Ribosomal_L14_2 20 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu4g1188 141 Gene3D Ribosomal protein L14 3 141 IPR036853 GO:0003735|GO:0005840|GO:0006412
Ssu4g1188 141 Hamap 50S ribosomal protein L14 [rplN]. 20 141 IPR000218 GO:0003735|GO:0005840|GO:0006412
Ssu4g1188 141 SUPERFAMILY Ribosomal protein L14 12 141 IPR036853 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1188 Ssu-Chr4 18970253 18970933 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1188 6 141 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.794 7.10e-96 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1188 K02894 - gmx:100811636 276.944
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1188 4 18970253 18970933 Ssu4g1188 4 18970253 18970933 ECH