Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1187 ATGGCGCCCAATCCAAGAGTGGTAGCGGCCTTTGCGGCAATGTCGAATCTCGGGATTCATGAATCAAAAGTGAAACCAGTGTTGAAGAAACTgcttaaattatatgataaaaactgGGAACTCATTGAAGAAGAGAGTTATAGGGCTCTGGCAGATGCAATATTTGAGGAGGACGAAAACAAGGCGACGGAGCCAGACCagaataataaaaacaagaagGATGGAGAAGTAGATGACGAAGAAGCTCATGTGCATGATGAGCCTTTGCGACCTTTGAAGAGGTTGCGTTTGAGAGGCCAAGAGGGTCAATCTTCACGCCCTCAGACTAGTGGTAGCCCCAGCTCAGCTGCCTTTCCATTGAAAACGCCTAAATTAGAAGATGGCGTAGCGCCTGAAAGTAGTTCCAGACTGCAGCCTCAAAGCCCAGCAGCATTGTCGGATGGAAATGCAAGGATTGAAGCTCGTCAAGTTCCCCCACAAGATGCCGTTGTTGACAAGGGAAAGCAACCTGTATCACCTCAAGTTACTCCCAGAGGGAGAAGGTCTATATCTGACAGAACTCCCCTTGCAGAACCACTTAAAGAGCCAACAGTTGAACCAGGAGCCACTTCGTTGGCAAATAACAAAATGCCTCATGCATTTACTTTGATCAAGCCCAAGGATGAGCCTGTTGATGATATACCAGATTATGAGATTCCCATTGCAGTGATTCCTCCTGAACGATCAAGTGGAGGAGACTCTCTAATGGGTGCAGCTGGAAAGCAAGATGGCCATGATGCTGTGGTATCACAATGCAGAGATAAAGACGTTGCAGGTGAAGATATTCTTCCTTCCTCAAACGAAGAAGCAACTTCTAATGGAGATGTAGCATTGTCATCTATGAGAGGGGAACGATCTGTAAAGATAACACAAACTGATGATGTTTCAAAGGAATCTGAGACCAATGGCTCACCAATTGTCAGAGGAAATATAGATTCAGTTATTGCAAATGGGTCAATCAGTGTTAAGTCTTCTTCTGCCATGGCTGCACCTCAAGTTCCTAGTTCTCTACCTTGCCTGAGTGATCTGGATGATGCTGTACTAGCTTCCAAGAAGGTTGGAATGAAGGATTTCTTACAAAGTGATGGCAGGAAGGAGCTGGAGGATCCTATATCCCCAAATTCACGTACTTTAGTGGTTGTCCAAAAACATCAGCTTACAACTGTTGATATAAGGGTTGTTCATGATGTTAATGACCTAGCAAAGGGAGAAGAAGGAGTGAATATTTCATGGGTGAATAACACTACTAATGATTTCCCACCACCCTTTCACTACATACCCCGAAACCTTGTGTTCCAAGATGCTTATGTAAATATTTCTCTATCTCGTATTGGGAATGAGGATTGTTGTTCAACTTGTATGGGCAATTGTGTATTGTCATCTAAACCATGTTCTTGTACAAATAAAACTGGGGGTGAATTTGCTTACACTACACAAGGCCTACTAAAGGAAAAGTTCTTGGAGGAGTGTATTGCCATCAGCCGCAATCctcaaaattatttctattgcAAAGCCTGTCCGCTTGAAAGATCGAAGAATGATGATTGTTTAGAACCATGCAAAGGACACTTAAAGAGGAAGTTTATTAAAGAGTGCTGGAGCAAATGTGGCTGTGGGAAACATTGTGGCAATAGGGTTGTCCAGCGTGGAATAACTTGCAATGTGCAGGTGTTTTTGACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGCGCATTTGTATGTGAGTTTGTTGGGGAAATTTTAACTGTCAAAGAGTTGCACGAGAGGAACATGAAATATCCCAAAAATGGGAAATATACATACCCAATTTTATTGGATGCAGATTGGGGTTCAGGGGTTGTGAAGGATAGAGAAGCTCTTTGCTTATATGCTGCATCGTATGGAAATGCTGCCAGATTTATTAATCACAGATGTTTGGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGAGCCCAGCTCATCACTACTATCATTTTGCCTTCTTCACATCCAGAAAAGTAGCAGCACAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGACCATGATCAGCCTGTTGAGCTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATTAAGCGATCAAATAGATCCATCAGATCGTCAATTGCATGA 2211 0.4238 MAPNPRVVAAFAAMSNLGIHESKVKPVLKKLLKLYDKNWELIEEESYRALADAIFEEDENKATEPDQNNKNKKDGEVDDEEAHVHDEPLRPLKRLRLRGQEGQSSRPQTSGSPSSAAFPLKTPKLEDGVAPESSSRLQPQSPAALSDGNARIEARQVPPQDAVVDKGKQPVSPQVTPRGRRSISDRTPLAEPLKEPTVEPGATSLANNKMPHAFTLIKPKDEPVDDIPDYEIPIAVIPPERSSGGDSLMGAAGKQDGHDAVVSQCRDKDVAGEDILPSSNEEATSNGDVALSSMRGERSVKITQTDDVSKESETNGSPIVRGNIDSVIANGSISVKSSSAMAAPQVPSSLPCLSDLDDAVLASKKVGMKDFLQSDGRKELEDPISPNSRTLVVVQKHQLTTVDIRVVHDVNDLAKGEEGVNISWVNNTTNDFPPPFHYIPRNLVFQDAYVNISLSRIGNEDCCSTCMGNCVLSSKPCSCTNKTGGEFAYTTQGLLKEKFLEECIAISRNPQNYFYCKACPLERSKNDDCLEPCKGHLKRKFIKECWSKCGCGKHCGNRVVQRGITCNVQVFLTSDGKGWGLRTLEDLPKGAFVCEFVGEILTVKELHERNMKYPKNGKYTYPILLDADWGSGVVKDREALCLYAASYGNAARFINHRCLDANLIEIPVEVESPAHHYYHFAFFTSRKVAAQEELTWDYGINFDDHDQPVELFQCRCGSKFCRNIKRSNRSIRSSIA 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1187 736 MobiDBLite consensus disorder prediction 278 292 - -
Ssu4g1187 736 MobiDBLite consensus disorder prediction 58 100 - -
Ssu4g1187 736 Gene3D - 1 60 IPR043017 -
Ssu4g1187 736 MobiDBLite consensus disorder prediction 276 321 - -
Ssu4g1187 736 MobiDBLite consensus disorder prediction 237 260 - -
Ssu4g1187 736 ProSiteProfiles SET domain profile. 566 699 IPR001214 GO:0005515
Ssu4g1187 736 MobiDBLite consensus disorder prediction 58 206 - -
Ssu4g1187 736 ProSiteProfiles Pre-SET domain profile. 462 563 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g1187 736 SMART set_7 566 705 IPR001214 GO:0005515
Ssu4g1187 736 SMART preset_2 410 550 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g1187 736 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 736 IPR025776 -
Ssu4g1187 736 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 735 - -
Ssu4g1187 736 Pfam Pre-SET motif 414 558 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Ssu4g1187 736 Gene3D SET domain 413 724 IPR046341 -
Ssu4g1187 736 SUPERFAMILY SET domain 420 722 IPR046341 -
Ssu4g1187 736 CDD SET_SETDB-like 434 699 - -
Ssu4g1187 736 Pfam SET domain 578 699 IPR001214 GO:0005515
Ssu4g1187 736 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 GO:0018024
Ssu4g1187 736 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR2-LIKE PROTEIN 1 735 - -
Ssu4g1187 736 MobiDBLite consensus disorder prediction 101 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1187 Ssu-Chr4 18947467 18953975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1187 315 722 Su(var)3-9 homologs AT1G73100 27.059 2.50e-28 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Ssu4g1187 Pre-SET 4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1187 - - gmx:100788602 1215.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1187 4 18947467 18953975 Ssu4g1187 4 18947467 18953975 ECH
Ssu7g2255 7 44481190 44482972 Ssu4g1187 4 18947467 18953975 PCT