Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1179 ATGTCTAAAGATGATAACTCTTCGCAGGATTCTTCATCTGATCTTGAATTGGCTCTCTCCTTGACCCTCTCTCCCTATGCCACCGCTTCCTCGTTGAGCAGGACCAAGAGACCTTCCTCTCTTTCTGATTCCGATTCTGCTGTTCCCGCTACCGCTCCCAGtCACGTTGTTGGATGGCCTCCCCTTGGAGCATATAGAATGAACAGCTATAATAACCAAGCAAAATCACCAACCACGGAAGTATTCAATCCTACAGTTGACAAAAGAGCAAGCAATAATACTGGGGTTAGGAAGAGTGCAGATGGTGGCAGTGATAGTAACAACATTATTtccaaagaaaaaggaaacctCAGGAGTTCCCTGTTTGTGAAAGTAAAAATGGATGGGATACCAATTGGTAGGAAGGTCGATTTGAGTGCTCATGGTTCCTATGAAACCTTAGCTCAAACCTTGGAGGATATGTTTGATGAATCAACTACAGTCCTCACTCACCGAGTAGGATCAAATGGAGAAGATCATGGTACTATAGTTGGAGCAAATGGGCATTCGAAATTGCTGGATGGTTCTTCTGACTTTGTGCTCACTTATGAAGACAAGGAAGGAGACTGGATGCTTGTTGGAGATGTTCCTTGGTGGATGTTCCTTAACTCTGTGAGGAGGCTAAGAATCATGAGGACACCTGAAGCTAATCGACTTGCTCCAAGATTGGAAGAAAAGAACAGAAGATCGAAATGCAAGCCCATATAG 747 0.4311 MSKDDNSSQDSSSDLELALSLTLSPYATASSLSRTKRPSSLSDSDSAVPATAPSHVVGWPPLGAYRMNSYNNQAKSPTTEVFNPTVDKRASNNTGVRKSADGGSDSNNIISKEKGNLRSSLFVKVKMDGIPIGRKVDLSAHGSYETLAQTLEDMFDESTTVLTHRVGSNGEDHGTIVGANGHSKLLDGSSDFVLTYEDKEGDWMLVGDVPWWMFLNSVRRLRIMRTPEANRLAPRLEEKNRRSKCKPI 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1179 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 27 238 IPR003311 GO:0005634|GO:0006355
Ssu4g1179 248 MobiDBLite consensus disorder prediction 28 49 - -
Ssu4g1179 248 MobiDBLite consensus disorder prediction 75 111 - -
Ssu4g1179 248 Gene3D - 115 238 - -
Ssu4g1179 248 ProSiteProfiles PB1 domain profile. 120 228 IPR000270 GO:0005515
Ssu4g1179 248 PANTHER AUXIN-RESPONSIVE PROTEIN IAA11 27 238 - -
Ssu4g1179 248 Pfam AUX/IAA family 36 235 IPR033389 -
Ssu4g1179 248 MobiDBLite consensus disorder prediction 28 57 - -
Ssu4g1179 248 SUPERFAMILY CAD & PB1 domains 116 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1179 Ssu-Chr4 18844263 18848614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1179 81 234 B3 DNA Binding Superfamily AT4G23980 28.125 3.45e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Ssu4g1179 AUX_IAA 1.6e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1179 K14484 - gmx:100789143 381.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1179 4 18844263 18848614 Ssu4g1179 4 18844263 18848614 ECH
Ssu4g1179 4 18844263 18848614 Ssu7g2259 7 44532695 44535580 PCT