Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1178 ATGAAGAATAACAAGATGCAAATGAAAATCCagcttttcatcttcttctgtTACATTGGTTGTCTCTCTTATGGTTTTGCTGCTGCCACAAACGATGAAGTATCAGCTTTGCTTTCTATAAAAGCAGGTCTCATTGATCCGTTGAACACCCTTCAGGATTGGAAACTGCATGACAAAGCACCAGGAAAGGATGCAGTTCATTGTAACTGGACTGGCGTCACATGCAACTCAGCTGGTGCTGTGGAGAAGCTTGATCTCTCCCACAAGAATCTCAGTGGCAGAGTATCCAATGATATACAAAGACTTAAATGTCTTACTTCTCTCAACTTGTGTTGCAATGCTTTTTCATCACCATTGCCAAAATCCATAGCTAATCTCACCACACTTACCAGCCTTGATATAAGCCAAAATTTCTTCATTGGTGACTTTCCATTAGGCCTTGGAAGGGCATGGAGACTTATGGCCTTAAATGCATCCAGCAATGAGTTCTCAGGTTCTCTTCCTGAGGACCTTGGAAATGCCTCTTCCTTAGAGATGCTGGATCTCAGAGGCAGTTTCTTTGTCGGGTCAGTTCCAAAATCATTCAGTAACTTGCATAAGTTGACTTTCCTTGGTCTATCTGGGAACAATCTCACTGGTAAAATTCCTGGAGAGGTGGGACAACTTTCATCACTGGAGTATATGATCCTTGGATATAATGAATTTGAAGGTGGGATTCCAGAAGAGTTTGGAAACCTCACCAATCTTAAGTATCTTGATTTAGCAGTAGCCAATCTTGGTGGTGAGATTCCAGGTGGATTGGGAGAGCTCAAGTTGTTAAATACAGTTttcttatacaacaacaattttgAAGGCAGAATTCCAGCAGCAATTGGCAACATGACTTCTTTGCAGTTGCTGGATCTTTCAGATAACATGTTGTCAGGAAAAATTCCAGATGAAATAAGTCTGCTGAAGAATTTGAAACTTCTCAACTTGATGGGTAACCAGCTGTCTGGTCATGTGCCTTCTGGCTTTGGAGATTTGCCACAACTGGAGGTACTTGAGCTATGGAACAATTCCTTGTCAGGGCCATTGCCTAGAAACCTTGGCAAGAATTCACCGTTGCAATGGTTGGATGTGTCATCCAATTCGCTGTCCAGAGAGATTCCAGAAACTCTTTGCAGCCAGGGCAATCTCACCAAGCTCATACTATTCAACAATGCCTTCTCTGGTCCAATTCCATCAAGCCTATCAATGTGCCCTTCGCTTGTTCGTGTTCGAATTCAGAACAATTTTCTTTCTGGGACAGTTCCTGTGGGTCTTGGGAAGCTTGGGAAGCTTCAAAGGTTAGAATTGGCTAACAATAGTCTTTCTGGTGGAATTCCAGATGACATTGCTTCTTCCACATCCCTTTCCTTCATTGATCTCTCAAGAAACAATCTCCattcttctcttccttccacTGTCTTTTCCATTCCAAACCTGCAAGCTTTCATGGTCTCCAACAACAACTTGGAAGGTGAAATCCCAGACCAATTCCAGGATTGTCCATCACTTGCAGTTCTTGATCTCTCATCAAATCATCTATCTGGAAGCATTCCAGCAAGCATTGCTTCATGTCAGAAGTTGGTAAATTTGAACCTCCAGAACAACCAATTGACTGGTGAAATCCCAAAAGCCCTAGCTAAGATGCCAACATTAGCCATGCTTGATCTGTCCAACAATTCTCTGACAGGCCAAATACCTGAAAGCTTTGGAATTTCTCCAGCTCTGGAAGCACTCAATGTCTCATACAATAAGCTAGAAGGTCCAGTCCCAGCAAATGGAATACTAAGAACTATAAACCCAAATGATCTTGGGGGCAATGCTGGCCTATGTGGTGGTGTCCTCCCTCCATGTGACCAAAACTTTGCATACTCATCAAGGCGCGGAAGCTCACGTGCAAAGCACATTATTACAGCATGGATCACTGGACTGTCTTCAATCCTAGTTATCGGGATTGCAATTTTGGTGGCAAGATCTTTGTACATAAGGTGGTACACAGAAGGGTTTTGCTTCAGAGAAAGATTTTATAAAGGTAGCAAAGGGTGGCCTTGGAGATTGATGGCATTTCAGAGGCTTGGTTTTACAAGTACTGACATTCTAGCTTGCATCAAGGAAACAAATGTGATTGGCATGGGAGCCACCGGGGTTGTTTATAAGGCTGAGATACCACAATCAAATACAGTTATGGCAGTGAAAAAATTGTGGAGAACAGGAACTGATATTGAAGTAGGAAGCAGTGATGACCTTGTGGGAGAGGTGAATGTTTTAGGGAGGTTAAGGCATAGGAACATTGTTAGACTATTAGGATTTCTTCATAATGACATTGATGTGATGATAGTTTATGAATTCATGCACAATGGCAACCTGGGAGAAGCCTTGCATGGTAGACAAGCAACAAGACTGCTTGTAGACTGGGTTTCGCGGTATAACATAGCTCTAGGAGTTGCACAAGGACTTGCTTATCTTCATCATGATTGTCATCCACCCGTTATCCATCGAGACATCAAATCAAGCAACATATTGCTTGATGCAAATCTTGAGGCAAGGATAGCAGATTTTGGTTTAGCCAAGATGATGATCCGGAAGAATGAAACAGTCTCCATGGTTGCTGGATCCTATGGCTACATTGCCCCTGAATATGGATATGCCTTGAAGGTGGATGAAAAGATTGACGTTTACAGTTATGGAGTAGTTTTGTTGGAGCTTCTCACAGGAAAGAAACCTCTAGATCCAGACTTCGGAGAGTCAATAGACATAGTAGAGTGGATTAGAATGAAGATTAGAGACAACAAATCTCTGGAAGAAGCATTAGACCCCAGTGTAGGAAACAGCAGGCATGTTCTAGAAGAGATGCTTTTAGTTCTAAGAATAGCAATTCTATGCACTGCCAAGCTCCCCAAGGACAGACCAACCATGAGGGATGTCGTAATGATGCTTGGAGAGGCAAAGCCTCGGAGAAAGAGCAGTGGCAACGATGCAGTTAACAACAAAGAGACCCCAGTTTTTTCACCAGTTAATGGCCTAATGTAG 3057 0.4197 MKNNKMQMKIQLFIFFCYIGCLSYGFAAATNDEVSALLSIKAGLIDPLNTLQDWKLHDKAPGKDAVHCNWTGVTCNSAGAVEKLDLSHKNLSGRVSNDIQRLKCLTSLNLCCNAFSSPLPKSIANLTTLTSLDISQNFFIGDFPLGLGRAWRLMALNASSNEFSGSLPEDLGNASSLEMLDLRGSFFVGSVPKSFSNLHKLTFLGLSGNNLTGKIPGEVGQLSSLEYMILGYNEFEGGIPEEFGNLTNLKYLDLAVANLGGEIPGGLGELKLLNTVFLYNNNFEGRIPAAIGNMTSLQLLDLSDNMLSGKIPDEISLLKNLKLLNLMGNQLSGHVPSGFGDLPQLEVLELWNNSLSGPLPRNLGKNSPLQWLDVSSNSLSREIPETLCSQGNLTKLILFNNAFSGPIPSSLSMCPSLVRVRIQNNFLSGTVPVGLGKLGKLQRLELANNSLSGGIPDDIASSTSLSFIDLSRNNLHSSLPSTVFSIPNLQAFMVSNNNLEGEIPDQFQDCPSLAVLDLSSNHLSGSIPASIASCQKLVNLNLQNNQLTGEIPKALAKMPTLAMLDLSNNSLTGQIPESFGISPALEALNVSYNKLEGPVPANGILRTINPNDLGGNAGLCGGVLPPCDQNFAYSSRRGSSRAKHIITAWITGLSSILVIGIAILVARSLYIRWYTEGFCFRERFYKGSKGWPWRLMAFQRLGFTSTDILACIKETNVIGMGATGVVYKAEIPQSNTVMAVKKLWRTGTDIEVGSSDDLVGEVNVLGRLRHRNIVRLLGFLHNDIDVMIVYEFMHNGNLGEALHGRQATRLLVDWVSRYNIALGVAQGLAYLHHDCHPPVIHRDIKSSNILLDANLEARIADFGLAKMMIRKNETVSMVAGSYGYIAPEYGYALKVDEKIDVYSYGVVLLELLTGKKPLDPDFGESIDIVEWIRMKIRDNKSLEEALDPSVGNSRHVLEEMLLVLRIAILCTAKLPKDRPTMRDVVMMLGEAKPRRKSSGNDAVNNKETPVFSPVNGLM 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1178 1018 ProSiteProfiles Protein kinase domain profile. 712 1011 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1178 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 839 851 IPR008271 GO:0004672|GO:0006468
Ssu4g1178 1018 ProSitePatterns Protein kinases ATP-binding region signature. 718 742 IPR017441 GO:0005524
Ssu4g1178 1018 Gene3D Ribonuclease Inhibitor 340 633 IPR032675 -
Ssu4g1178 1018 PANTHER UNNAMED PRODUCT 8 1000 - -
Ssu4g1178 1018 Gene3D Transferase(Phosphotransferase) domain 1 797 1011 - -
Ssu4g1178 1018 SUPERFAMILY Protein kinase-like (PK-like) 708 988 IPR011009 -
Ssu4g1178 1018 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 8 1000 - -
Ssu4g1178 1018 Pfam Leucine rich repeat N-terminal domain 31 76 IPR013210 -
Ssu4g1178 1018 Pfam Leucine rich repeat 487 547 IPR001611 GO:0005515
Ssu4g1178 1018 Pfam Leucine rich repeat 273 331 IPR001611 GO:0005515
Ssu4g1178 1018 Gene3D Ribonuclease Inhibitor 29 194 IPR032675 -
Ssu4g1178 1018 SMART serkin_6 712 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1178 1018 SMART LRR_typ_2 369 390 IPR003591 -
Ssu4g1178 1018 SMART LRR_typ_2 558 582 IPR003591 -
Ssu4g1178 1018 SMART LRR_typ_2 342 366 IPR003591 -
Ssu4g1178 1018 SMART LRR_typ_2 438 462 IPR003591 -
Ssu4g1178 1018 SMART LRR_typ_2 246 270 IPR003591 -
Ssu4g1178 1018 SMART LRR_typ_2 198 222 IPR003591 -
Ssu4g1178 1018 SMART LRR_typ_2 294 317 IPR003591 -
Ssu4g1178 1018 SMART LRR_typ_2 510 534 IPR003591 -
Ssu4g1178 1018 SMART LRR_typ_2 463 486 IPR003591 -
Ssu4g1178 1018 SMART LRR_typ_2 318 341 IPR003591 -
Ssu4g1178 1018 SUPERFAMILY RNI-like 288 597 - -
Ssu4g1178 1018 SUPERFAMILY L domain-like 66 358 - -
Ssu4g1178 1018 Pfam Protein kinase domain 714 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1178 1018 PRINTS Leucine-rich repeat signature 513 526 - -
Ssu4g1178 1018 PRINTS Leucine-rich repeat signature 558 571 - -
Ssu4g1178 1018 MobiDBLite consensus disorder prediction 992 1018 - -
Ssu4g1178 1018 Gene3D Ribonuclease Inhibitor 200 272 IPR032675 -
Ssu4g1178 1018 Gene3D Ribonuclease Inhibitor 273 339 IPR032675 -
Ssu4g1178 1018 Gene3D Phosphorylase Kinase; domain 1 712 796 - -
Ssu4g1178 1018 ProSiteProfiles Leucine-rich repeat profile. 296 318 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1178 Ssu-Chr4 18839330 18842615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1178 11 1018 Receptor kinase-like Gene Family AT1G08590 60.253 0.0 1174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu4g1178 Pkinase 3.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1178 - - gmx:100811284 1853.57