Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1173 atggccCTCGATGGAATCTCAAGTACGACGTTGTTTTCTTCTTCGGGATCGTTTGACACCCTTTGGAGTGCGATCCTCGGATTGCCGTTGTTGGAACTGGTGGCAATCTGTGCCAACTTGACActgtttcttctctttctcttcgtTGTTTCGGCGAGGAAGGTGCTTGTGTGTGTAGGGGGAAGAGTTAGATTTGGCAAGGACAATGGAACCGGCAATGCCAGTTCAGGTTGTGTTAGTGTTGATTTGGAAACGCGCGACGTTCGAATTGGGACGTGGTTCAAGTTGTCGGTGTTGTCTTGTTTCTATGTTCTGTTGGTGCAAGTTTTGGTGTTGGGGTTTGATGGGTTTGCTTTGATTAAGGGAGGGAATGTGGATTTTTATTTGTCTCTTCTTTCTGTGCCCCTTGCGCAGGGTTTAGCTTGGGTTGTGTTGAGCTTCGCGGCTTTGCATTGCAAGTTAAGGGCGTGTGAAAGGTTTCCAATTTTGTTGAGAGTTTGGTGGTTTGTGTTGTTTGTTATTTGTGTGTGTACTTTGTATGTTGATGGGAGGGGGGTTTGGATGGAAGGTTCCAAGCACCTGCGTTCTCATGTTGTGGCGAATTTCGCGGTTACTCCTGCTCTTGCCTTTTTGTGTATTGTGGCAATTAGGGGAGTTACTGGTATAAAGTTTTGTGGGAATTCTGAGGAGCAACAGCCATTGCTTGTTGAGGAAGAACCGGGGAGTATCAAGATTACTCCTTATAGTGATGCTGGACTTTTTAGCTTGGCCACTTTGTCTTGGCTGAATCCACTTCTTTCCATTGGGGCAAAGAGGCCACTGGAGCTTAAGGACATTCCCCTTGTTGCGCCGAAAGACCGGGCCAAGACAAATTATAAGGTTTTGAATTCTAATTGGGAGAGATTGAAGGCTGAAAACCAGTCCGGGCAGCCTTCGTTGGCTTGGGAGCTTCTTAAGTCATTCTGGAAGGAGGCGGCTTGTAATGCAGTATTTGCTGGTGTCACTACTCTTGTCTCGTATGTTGGTCCATACATGATAAGTTACTTTGTTGATTACTTAGTTGGCAAAGAGATTTTCCCACATGAGGGGTATGTCCTTGCAGGGATATTCTTTGTGGCAAAGCTTGTGGAGACCTTGACTACTAGGCAGTGGTATCTAGGGGTGGACATCTTGGGTATGCATGTTAGGTCAGCTCTAACAGCAATGGTATATAGAAAGGGGCTAAGGCTGTCGAGCTTGGCCAAGCAAAGTCACACAAGTGGGGAGATTGTTAACTACATGGCTATTGATGTTCAGAGGGTAGGGGATTACTCTTGGTATCTTCATGACATGTGGATGCTTCCTCTGCAGATTGTTCTTGCCCTTGCAATTTTGTATAAGAATGTTGGAATTGCCTGTATTGCAACGCTGATTGCTACAATAATTTCCATTGTCGTCACTGTTCCTGTGGCCAGGATCCAAGAAAATTATCAAGACAAATTAATGGCTGCTAAGGATGAAAGGATGAGAAAAACATCTGAGTGCCTGAGGAATATGAGGATTCTCAAGCTTCAAGCTTGGGAGGACAGATATAGAGTGAAATTGGAGGAAATGCGTGGAGTAGAGTTCAAGTGGCTTCGGAAAGCCCTCTATTCTCAGGCTTTCATAACTTTCATATTCTGGAGCTCCCCTATATTTGTTTCAGCAGTCACTTTTGGTACTTCCATATTGTTGGGTGGTCAGCTAACTGCAGGTGGTGTACTTTCTGCTCTAGCTACTTTCAGGATCCTGCAAGAACCTTTGAGGAATTTTCCAGACTTGGTGTCAACAATGGCTCAGACAAAAGTTTCTCTTGATCGATTATCTGGTTTCCTGCTGGAGGAAGAATTGCAGGAAGATGCAACTATTGTCTTGCCACAAGGCATTACTAACATTGCTATAGAAATTAAGGATGGTGTTTTCTGTTGGGACCCTTCTTCATCTTCTAGGCCTACCCTATCAGGGATAAGTATGAAAGTTGAAAGAGGGATGCGCGTGGCTGTTTGTGGTATGGTTGGTTCAGGGAAATCAAGTTTTCTTTCTTGCATCCTTGGAGAGATTCCTAAACTTTCTGGTGAAGTCAGAGTGTGTGGCTCTGCTGCATATGTCTCCCAATCAGCGTGGATACAATCAggaaatatagaagaaaatatcCTCTTTGGAAGTCCAATGGACAAAGCAAAGTACAAGAATGTTCTTCATGCTTGTTCACTGAAAAAGGACCTAGAACTTTTCTCACATGGTGATCAGACAATTATTGGGGATAGAGGTATAAACCTGAGTGGTGGCCAGAAGCAGCGGGTTCAACTTGCACGAGCACTCTACCAAGATGCTGATATTTATCTTCTTGATGATCCCTTCAGTGCAGTTGATGCTCATACCGGATCAGACTTGTTTAGGGAGTATATATTGACAGCTCTAGCAGAGAAAACAGTCATTTATGTGACCCATCAAGTCGAATTTCTTCCCGCTGCTGATTTGATACTGGTTCTTAAAGAAGGCTGCATCATACAGGCAGGAAAGTATGACAATCTTTTACAAGCAGGAACAGATTTTAAAACTCTGGTTTCAGCTCACCAGGAAGCCATAGAGGCTATGGATATCCCTACTCACTCCTCTGAAGATTCAGATGAAAATTTATCCCTGGATGCATCTGTTATGATCAGTAAGAAATCCATTTGTTCTGCAAACGATATTGACAGTTTGGCAAAGGAAGTTCAAGAGGGATCATCTACTTCAGATCAAAAAGCAAttaaggagaagaagaaagtaAAACGATCGAGAAAGAAGCAGCTTGTTCAGGAAGAGGAGAGGATTAGAGGTAGAGTCAGCATGAAGGTGTATTTGTCATACATGGCAGCAGCATATAAAGGCTTATTGATTCCACTCATAATCATTGCACAAGCATTATTTCAGTTCCTTCAGATTGCTAGTAGTTGGTGGATGGCTTGGGCTAACCCTCAAACAGAAGGAGACCTGCCCAAAGTAACTCCCTCAGTTCTTCTTCTTGTTTACATGGCCCTTGCTTTTGGCAGCTCTTGGTTTATATTTATAAGGGCTGTTCTAGTGGCTACATTTGGTCTTGCAGCTGCTCAGaagctatttttgaaaatgcttAGAAGTGTTTTCCATGCACCAATGTCTTTCTTTGACTCTACACCAGCTGGGAGGATCTTGAATCGGGTATCAATTGATCAAAGTGTTGTGGATCTTGACATTCCTTTTAGACTTGGTGGGTTTGCTTCAACAACAATACAGCTTATTGGTATTGTTGGTGTAATGACAGAAGTTACATGGCAAGTTTTGTTCTTAGTTGTCCCAATGGCTGTTGCTTGTTTGTGGATGCAGCGGAACCTCTATCTTCTTGATTGCTTTGCACGACCATTCTTCTGCAGTCTTTCTGCAATTGAGTGGCTCTGCCTGCGGATGGAGTTACTGTCGACCTTTGTATTTGCTTTCTGCATGGTATTACTTGTGAGCTTTCCTCGCAGAAGTATCGACCCCAATTCTCGCCCTCCATCCTCATGGCCAGAAAATGGGACAATCGAAATAATTGATTTGAAGGCACTTGATAAGTCTCAGCTTGGAGAGGTTATCCGTGAGAAAGGACAAAAGCTTGATACACCAGTTCTAGAAAATGGAGATAATTGGAGTGTAGGACAGCGACAACTTGTTGCTCTGGGCCGAGCTCTGCTGCAGCAGTCAAAAATACTTGTACTGGATGAAGCAACGGCATCAGTTGATACCGCCACGGATAATCTTATCCAGAAGATTATCCGAAATGAGTTCAAAGAGTGCACTGTGTGCACCATTGCACATCGTATACCTACTGTCATCGACAGTGATCAAGTTCTTGTGCTCAGTGACGGTCGAGTTGCAGAGTTCGACACTCCTTCAAGACTATTAGAGGATAAGTCATCCATGTTTCTGAAGTTGGTGACTGAGTATTCATCACGTTCAAGTGGTATACCAGATTTTTAG 3999 0.4291 MALDGISSTTLFSSSGSFDTLWSAILGLPLLELVAICANLTLFLLFLFVVSARKVLVCVGGRVRFGKDNGTGNASSGCVSVDLETRDVRIGTWFKLSVLSCFYVLLVQVLVLGFDGFALIKGGNVDFYLSLLSVPLAQGLAWVVLSFAALHCKLRACERFPILLRVWWFVLFVICVCTLYVDGRGVWMEGSKHLRSHVVANFAVTPALAFLCIVAIRGVTGIKFCGNSEEQQPLLVEEEPGSIKITPYSDAGLFSLATLSWLNPLLSIGAKRPLELKDIPLVAPKDRAKTNYKVLNSNWERLKAENQSGQPSLAWELLKSFWKEAACNAVFAGVTTLVSYVGPYMISYFVDYLVGKEIFPHEGYVLAGIFFVAKLVETLTTRQWYLGVDILGMHVRSALTAMVYRKGLRLSSLAKQSHTSGEIVNYMAIDVQRVGDYSWYLHDMWMLPLQIVLALAILYKNVGIACIATLIATIISIVVTVPVARIQENYQDKLMAAKDERMRKTSECLRNMRILKLQAWEDRYRVKLEEMRGVEFKWLRKALYSQAFITFIFWSSPIFVSAVTFGTSILLGGQLTAGGVLSALATFRILQEPLRNFPDLVSTMAQTKVSLDRLSGFLLEEELQEDATIVLPQGITNIAIEIKDGVFCWDPSSSSRPTLSGISMKVERGMRVAVCGMVGSGKSSFLSCILGEIPKLSGEVRVCGSAAYVSQSAWIQSGNIEENILFGSPMDKAKYKNVLHACSLKKDLELFSHGDQTIIGDRGINLSGGQKQRVQLARALYQDADIYLLDDPFSAVDAHTGSDLFREYILTALAEKTVIYVTHQVEFLPAADLILVLKEGCIIQAGKYDNLLQAGTDFKTLVSAHQEAIEAMDIPTHSSEDSDENLSLDASVMISKKSICSANDIDSLAKEVQEGSSTSDQKAIKEKKKVKRSRKKQLVQEEERIRGRVSMKVYLSYMAAAYKGLLIPLIIIAQALFQFLQIASSWWMAWANPQTEGDLPKVTPSVLLLVYMALAFGSSWFIFIRAVLVATFGLAAAQKLFLKMLRSVFHAPMSFFDSTPAGRILNRVSIDQSVVDLDIPFRLGGFASTTIQLIGIVGVMTEVTWQVLFLVVPMAVACLWMQRNLYLLDCFARPFFCSLSAIEWLCLRMELLSTFVFAFCMVLLVSFPRRSIDPNSRPPSSWPENGTIEIIDLKALDKSQLGEVIREKGQKLDTPVLENGDNWSVGQRQLVALGRALLQQSKILVLDEATASVDTATDNLIQKIIRNEFKECTVCTIAHRIPTVIDSDQVLVLSDGRVAEFDTPSRLLEDKSSMFLKLVTEYSSRSSGIPDF 1332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1173 1332 Pfam ABC transporter transmembrane region 969 1122 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g1173 1332 Pfam ABC transporter transmembrane region 330 594 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g1173 1332 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 80 1123 - -
Ssu4g1173 1332 SUPERFAMILY ABC transporter transmembrane region 315 620 IPR036640 GO:0005524|GO:0016021
Ssu4g1173 1332 CDD ABC_6TM_ABCC_D2 967 1174 IPR044726 GO:0140359
Ssu4g1173 1332 Gene3D ABC transporter type 1, transmembrane domain 890 1127 IPR036640 GO:0005524|GO:0016021
Ssu4g1173 1332 Pfam ABC transporter 659 793 IPR003439 GO:0005524
Ssu4g1173 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 329 606 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g1173 1332 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 80 1123 - -
Ssu4g1173 1332 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1196 1332 - -
Ssu4g1173 1332 CDD ABC_6TM_ABCC_D1 327 614 IPR044746 GO:0140359
Ssu4g1173 1332 ProSitePatterns ABC transporters family signature. 766 780 IPR017871 GO:0005524
Ssu4g1173 1332 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1196 1332 - -
Ssu4g1173 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1043 1320 IPR003439 GO:0005524
Ssu4g1173 1332 SUPERFAMILY ABC transporter transmembrane region 966 1165 IPR036640 GO:0005524|GO:0016021
Ssu4g1173 1332 Coils Coil 487 507 - -
Ssu4g1173 1332 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 1121 1175 - -
Ssu4g1173 1332 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1121 1175 - -
Ssu4g1173 1332 Gene3D ABC transporter type 1, transmembrane domain 298 621 IPR036640 GO:0005524|GO:0016021
Ssu4g1173 1332 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 640 864 IPR003439 GO:0005524
Ssu4g1173 1332 CDD ABCC_MRP_domain1 640 840 - -
Ssu4g1173 1332 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 969 1123 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Ssu4g1173 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1194 1316 IPR027417 -
Ssu4g1173 1332 SMART AAA_5 668 849 IPR003593 -
Ssu4g1173 1332 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 636 863 IPR027417 -
Ssu4g1173 1332 Coils Coil 285 305 - -
Ssu4g1173 1332 Pfam ABC transporter 1206 1251 IPR003439 GO:0005524
Ssu4g1173 1332 Gene3D - 1165 1322 IPR027417 -
Ssu4g1173 1332 Gene3D - 622 885 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1173 Ssu-Chr4 18794487 18802252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1173 650 857 Calmodulin-binding Proteins AT2G36910 31.718 5.38e-20 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1173 - - gmx:100814850 2090.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1173 4 18794487 18802252 Ssu4g1173 4 18794487 18802252 ECH
Ssu4g1173 4 18794487 18802252 Ssu7g2265 7 44573605 44582070 PCT