Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1167 ATGGAAGACCAAGGCAAAAACAAAGGCAAAGACGTCTTGAAACCTGAAAACTCTGGCACCCAATTAAAAGTACTAGTTGTAGATGACGATAAGTTCATCCGAATGACTCATCAAAGGATGTTGGAAATAATTGGGGTAAAAAATCTGGCTGCTGTGAAAAATGGCAAAGAAGCCGTGGACCGGCATCGCAATGGTGAAAGTTTTGACCTGATTCTCATGGATAAGGACATGCCTGTCATGAATGGAATTGAGGCAACAAAGACACTTTGTTCAATGGGCATTCATAGCAAGATTATTGGTGTGTCATCAAGCTGTACAGAGACTCATGTACAAGAATTTATGAAAGCCGGGTTAAATGACTACTACAACAAACCCTTGACCGTTGAAACGCTTAGAGAAATTCTTGATAAGATCCAGTCATGA 423 0.4043 MEDQGKNKGKDVLKPENSGTQLKVLVVDDDKFIRMTHQRMLEIIGVKNLAAVKNGKEAVDRHRNGESFDLILMDKDMPVMNGIEATKTLCSMGIHSKIIGVSSSCTETHVQEFMKAGLNDYYNKPLTVETLREILDKIQS 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1167 140 CDD REC_hyHK_CKI1_RcsC-like 24 135 - -
Ssu4g1167 140 SUPERFAMILY CheY-like 21 139 IPR011006 -
Ssu4g1167 140 Gene3D - 3 140 - -
Ssu4g1167 140 SMART REC_2 22 135 IPR001789 GO:0000160
Ssu4g1167 140 Pfam Response regulator receiver domain 24 135 IPR001789 GO:0000160
Ssu4g1167 140 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 139 - -
Ssu4g1167 140 ProSiteProfiles Response regulatory domain profile. 23 139 IPR001789 GO:0000160
Ssu4g1167 140 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 9 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1167 Ssu-Chr4 18573812 18574414 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1167 22 127 Response Regulator Gene Family AT3G04280 49.074 2.76e-24 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu4g1167 Response_reg 9.4e-24 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1167 - - var:108322984 176.792