Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1166 ATGGCTGCTTACACTTGTTCCACCGCCGACCTTCACGCACTTCTCGGCGGCGGCGCCAACGCCACCGCCGCCGCCGAATACATCTGCGGTCGTTTTGAAGCCATTTCAAACAAGTTCATTGACACCACTCGTGCCGTTGACAACACTTACCTTCTCTTCTCTGCTTACCTGGTGTTCGCCATGCAACTCGGCTTTGCCATGCTATGTGCCGGTTCCGTACGTGCCAAGAACACCATGAACATCATGCTCACCAACGTCCTCGATGCTGCCACGGGCGGCATCTTCTTCTACGTGTTTGGCTTTGCCTTGGCTTTTGGCACCCCTTCGAACGGTTTCATTGGGAAACACTTCTTCGGCCTTGACCGGTTTCCGTCGCCAAATTTCGACTACGGTTACTTCCTCTACCAATGGGCTTTTGCCATCGCTGCAGCGGGGATCACGAGTGGTTCCATCGCGGAGAGGACACAGTTTGTTGCTTATTTGATTTACTCGTCGGTTTTGACCGGTTTGGTGTACCCCATTGTGGCGCATTGGTTCTGGTGTTCTGATGGGTGGGGTAGTCCTGCTAGGGCGGAGGGTTTGTTGTTTGGATCtggggttgttgattttgctggCTCTGGCGTTGTTCATCTGGTTGGAGCTGTTGCCGGCTTCTGGGGTGCTTTCATTGAAGGCCCTAGAATTGGGAGGTTCGATAATCATGCGGGGAAGGCCGTGCCTATGAGAGGACACAGTGGAACGTTGGTGGTTCTGGGGACATTCTTGCTGTGGTTTGGTTGGTACGGTTTCAACCCTGGCTCGTTTCTCAACATTTTGAAGGCTTACGGAGAGAGCGGTTCTTACTACGGGCAATGGAGTGCTATTGGGAGGACTGCAGTGACCACAACTCTTGCTGGATGTTCAGCGGCACTGACTACACTCTTTGGGAAACGCATGCAAACGGGGCACTGGGATGTGACAGATGTTTGCAACGGTTTGCTTGGTGGGTTTGCTGCCATCACCGCGGGGTGTTCGGTTGTGGACCCTTGGGCTGCCATCGTATGTGGGTTCGTGGCTGCTTGGGTGCTCGTTGGCTGCAACTTGCTGGCGGAGAAGCTGAAGTATGATGATCCTCTTGAGGCTGCGCAGCTTCACGGTGGTTGCGGCACGTGGGGGATTGTATTCGCTGCTTTGTTTGCTAAGAAAGAGTATGTGAATGAGGTGTATCCGGGGCTCCCCGATAGGCCTTATGGGCTGTTGATGGGAGGGGGAGGGAAGCTCTTGGCTGCACACGTTGTTCAGATTTTGGCCATCACGGCTTGGGTGAGTGTCACAATGGGAGCGGTGTTCTTTGTGCTGCATAAACTGGATCTGCTGAGGATCTCGCCTGATGAGGAGATGGCGGGGTTGGACTTAACCAGCCATGGTGGATTGGCATATGAGTATCACGAAAGGGCTGAGAGTAAACCGGGATTTGGAGCAACTGTTTGA 1470 0.5306 MAAYTCSTADLHALLGGGANATAAAEYICGRFEAISNKFIDTTRAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYVFGFALAFGTPSNGFIGKHFFGLDRFPSPNFDYGYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGLVYPIVAHWFWCSDGWGSPARAEGLLFGSGVVDFAGSGVVHLVGAVAGFWGAFIEGPRIGRFDNHAGKAVPMRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGESGSYYGQWSAIGRTAVTTTLAGCSAALTTLFGKRMQTGHWDVTDVCNGLLGGFAAITAGCSVVDPWAAIVCGFVAAWVLVGCNLLAEKLKYDDPLEAAQLHGGCGTWGIVFAALFAKKEYVNEVYPGLPDRPYGLLMGGGGKLLAAHVVQILAITAWVSVTMGAVFFVLHKLDLLRISPDEEMAGLDLTSHGGLAYEYHERAESKPGFGATV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1166 489 TIGRFAM amt: ammonium transporter 47 473 IPR001905 GO:0008519|GO:0016020|GO:0072488
Ssu4g1166 489 SUPERFAMILY Ammonium transporter 44 454 - -
Ssu4g1166 489 PANTHER AMMONIUM TRANSPORTER 2 480 - -
Ssu4g1166 489 Pfam Ammonium Transporter Family 50 473 IPR024041 GO:0008519|GO:0016020|GO:0072488
Ssu4g1166 489 Gene3D Ammonium transporter AmtB like domains 25 485 IPR029020 -
Ssu4g1166 489 PANTHER AMMONIUM TRANSPORTER 2 480 - -
Ssu4g1166 489 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1166 Ssu-Chr4 18564137 18565606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1166 5 481 Inorganic Solute Cotransporters AT4G13510 73.431 0.0 726
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1166 K03320 - jre:109020544 824.698