Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1163 ATGGCAACGCAAGGTCAAGTCATTACCTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCCTTAACCATCGAAGACGTTCAAGTCGCTCCGCCTCAGGCCGGCGAGGTCCGAGTCCAAATCCTCTACACCGCTCTCTGTCACACCGATGCTTACACTTGGGGCGGCAAGGATCCCGAAGGTCTCTTCCCCTGTATTCTCGGCCATGAAGCTGCAGGGATTGTGGAGAGTGTTGGAGAAGGTGTTACTGAACTTCAGCCTGGGGATCATGTCGTTCCCTGTTACCAGGCTGAGTGTAGAGAGTGCAAGTTTTGCAAATCAGGCAAGACGAACCTCTGTGGCAAGGTTCGTGCTGCCACTGGAGCTGGGGTCATGCTCAACGATCGCAAGAGTCGTTTCTCTATTAATGGAAAGCCCATTTATCATTTCATGGGAACCTCCACTTTTAGTCAATACACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGACCCAAAGGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGTGGTGTTGCAACTGGCCTTGGAGCTGTCTGGAACACTGCAAAAGTGGAGGCAGGATCAATTGTTGCTATTTTTGGCCTTGGAACTGTTGGACTTGCTGTTGCAGAGGGTGCAAAAACTGCTGGTGCATCCCGGATTATTGGCATAGATATTGACAGCAAGAAGTTTGATATAGCAAAAAACTTTGGAGTCACTGAGTTTATAAATCCAAAAGAACATGATAAACCAATTCAACAGGTCATAATTGATCTCACGGATGGTGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTCTCGGTGATGAGATCTGCTTTGGAATGCTGCCACAGGGGCTGGGGAACATCAGTTGTTGTGGGTGTTGCAGCATCAGGGCAGGAAATATCAACCCGTCCTTTCCAATTGGTGAGTGGACGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAGGTGCCTTGGCTTGTAGACAAATACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCATACTATGTCTCTTTCTGAGATCAACAAGGCTTTTGATCTTTTGCATGAAGGGGGATGTCTTCGCTGTGTGCTTGCAACCCAAGAATGA 1140 0.4754 MATQGQVITCKAAVAWEPNKPLTIEDVQVAPPQAGEVRVQILYTALCHTDAYTWGGKDPEGLFPCILGHEAAGIVESVGEGVTELQPGDHVVPCYQAECRECKFCKSGKTNLCGKVRAATGAGVMLNDRKSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPKAPLEKVCLLGCGVATGLGAVWNTAKVEAGSIVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKFDIAKNFGVTEFINPKEHDKPIQQVIIDLTDGGVDYSFECIGNVSVMRSALECCHRGWGTSVVVGVAASGQEISTRPFQLVSGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHTMSLSEINKAFDLLHEGGCLRCVLATQE 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1163 379 Gene3D - 182 320 - -
Ssu4g1163 379 Gene3D - 13 372 - -
Ssu4g1163 379 PANTHER ALCOHOL DEHYDROGENASE 3 378 - -
Ssu4g1163 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Ssu4g1163 379 SUPERFAMILY GroES-like 3 198 IPR011032 -
Ssu4g1163 379 PANTHER S-(HYDROXYMETHYL)GLUTATHIONE DEHYDROGENASE 3 378 - -
Ssu4g1163 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Ssu4g1163 379 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Ssu4g1163 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Ssu4g1163 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Ssu4g1163 379 TIGRFAM adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Ssu4g1163 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1163 Ssu-Chr4 18522500 18525330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1163 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.911 1.35e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1163 K00121 - gmx:100816775 732.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1163 4 18522500 18525330 Ssu4g1163 4 18522500 18525330 ECH
Ssu4g1163 4 18522500 18525330 Ssu7g2269 7 44641141 44644366 PCT