Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1157 ATGACCGCCGGCGGCTGCTCTGCCGGAATTTCGCCGGCTGCCGGTCGCTCCTCGAAGCCGCTCTCTCCTGACGATGCTCTTCGCCGGTGTCGCGTTCGGCGAGAGAGAATGCCGGTGTCGGTTGTCTACCTCCTTGCTCTTCTCAACTTGCTTTTCTCTTGCCAAGTGAAGTCGATTTCTCTGAGCGTGTCATTTGCTTCATCAGAACGAGCTAAAATGTGGTTAGTTAAGCCTTCTTCTGGACCATCTTCTGCACCAGTGCCATCTCCATCTCATCAagGTCCTCATGTGACTCCAAGACCAAGACATCATTATCATCACCGTCGCCATCACAACATGAGACCTTATGTAGCGGCTCCACCCCCTTCCAAAGACCAAgCTTGTGGCCAAATCTGTACTGATCCGCTCACATCAACTCCCTTTGGTTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAGACTTACACTGGATGTAGTTCCTTATGCTGTTTTTCCAGTAATGACTGAGTTAGAGAATGAAATTGCATTAGGCACATATTTAGAGCAGAGTCAGGTGAAGATAATGGGTGCCACTGCTGATGGTCAAAATCAGGGAAGAACTATAGTTGATATTAACTTGGTTCCGCTGGGAGAGAAATTTGACAATACAACTGCAGCTCTGACATATGAGAGGTTTTGGCACAAGAAAGTTCCTCTAAATAGTAGCCTTTTTGGCGATTATGCTGTTGTGTACATTACTTATCCAGGAATGCCATCATCGCCGCCATATGGATCTTTAATTGGGAGTGGTCCCAGTCAAAGTATTGATGGTATTCTGCCAGTCAGTGCCAACTTTGTCAGCAAGAACCAGAAAATGAATCTTAGGACCATAATCATTGTTGCTTTATCTTCCTTTGTACTCTTGCTGGTTTTGGTGGGagcattttctattattttgaaatggaGGAAGACTAGGAGACCATCAAGTGCTGTTGGCCCTGCATTCGCATCATCTCTAAACAAGAGATCTGGCATGGGGTCTATGTTGTCAAGCAGTATTACAAGCTCAACATCAGTGTCACTTATGTCCACAATGGCTACTTCCATTCTCTCTGTTAAAACATTTTCACTTTCCGAGCTTGAGAAAGCAACAGATAAGTTTAATTCAAAGAGAGTGCTAGGTGAAGGAGGATTTGGACGTGTTTATAGTGGGACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTGCTAACAAGGGATAATCAGAATGGAGACCGTGAATTTATTGCAGGAGGTTGA 1281 0.445 MTAGGCSAGISPAAGRSSKPLSPDDALRRCRVRRERMPVSVVYLLALLNLLFSCQVKSISLSVSFASSERAKMWLVKPSSGPSSAPVPSPSHQGPHVTPRPRHHYHHRRHHNMRPYVAAPPPSKDQACGQICTDPLTSTPFGSPCGCVFPMKVRLTLDVVPYAVFPVMTELENEIALGTYLEQSQVKIMGATADGQNQGRTIVDINLVPLGEKFDNTTAALTYERFWHKKVPLNSSLFGDYAVVYITYPGMPSSPPYGSLIGSGPSQSIDGILPVSANFVSKNQKMNLRTIIIVALSSFVLLLVLVGAFSIILKWRKTRRPSSAVGPAFASSLNKRSGMGSMLSSSITSSTSVSLMSTMATSILSVKTFSLSELEKATDKFNSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTRDNQNGDREFIAGG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1157 426 MobiDBLite consensus disorder prediction 1 24 - -
Ssu4g1157 426 SUPERFAMILY Protein kinase-like (PK-like) 345 421 IPR011009 -
Ssu4g1157 426 MobiDBLite consensus disorder prediction 77 106 - -
Ssu4g1157 426 ProSiteProfiles Protein kinase domain profile. 381 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1157 426 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 41 424 - -
Ssu4g1157 426 ProSitePatterns Protein kinases ATP-binding region signature. 387 409 IPR017441 GO:0005524
Ssu4g1157 426 Gene3D Phosphorylase Kinase; domain 1 352 425 - -
Ssu4g1157 426 PANTHER OS01G0750732 PROTEIN 41 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1157 Ssu-Chr4 18454900 18459618 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1157 131 424 Receptor kinase-like Gene Family AT5G56890 45.246 1.14e-71 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1157 - - gmx:100815554 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1157 4 18454900 18459618 Ssu4g1157 4 18454900 18459618 ECH
Ssu4g1157 4 18454900 18459618 Ssu7g1932 7 38664195 38668830 PCT