Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1156 ATGCTAAGCCGTTTGCATCACCGTAATCTAGTGAAACTGATTGGTATTTGCATTGAAGGGCGCAGGCGTTGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTTGAGTCCCATTTGCATGGTGATGACAAGATAAAGGGAATGCTAGATTGGGAAGCACGGATGAAAATTGCCCTAGGAGCTGCTAGAGGATTGGCCTATCTTCACGAGGATTCCAATCCCCGTGTAATTCACCGAGACTTTAAAGCTAGCAATGTGTTATTAGAAGATGACTTTACTCCCAAAGTTTCTGATTTTGGCTTGGCAAGAGAAGCAACTGAAGGAAGTAATCATATTTCAACACGGGTGATGGGAACTTTTGGGTATGTTGCCCCAGAATATGCAATGACAGGTCATTTACTCGTCAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAACTTCTCACAGGCAGAAAGCCAGTGGATATGTCTCAACCTCAGGGACAGGAGAATCTTGTAACTTGGGCACGGCCACTGTTGACGAGTAGAGAAGGTCTAGAACTGCTGGTGGATCCATCTTTGGCTGGAAGTTACAACTTTGATGACATGGCAAAGGTTGCTGCTATTGCTTCAATGTGTGTTCACCCAGAGGTTACACAGAGACCTTTTATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATATACAATGATACAGATGAGACTTGTGGAGATTGTTGTAGTCAGAAGGATTCCTCTGCTCGGGAGTCTGATTTTAGAGGTGACCTTGCCCCTTCTGATAGCAGTTGGTGGAATGCAGGAGGGGTAACCCCTCGATTAACTTATGGGCAAGCATCTTCCTTCATCACTATGGAATACAGTTCTGGTCCACTTGAAGAAATGGAGAACAGACCGTTTTCAACTTCAAGCTTGATTGGAGATGAAATATCTTTACCAATTAGGCATGGGAATAGATCAGGTCCCTTAAGAACAGTCCGAAGCAAGCTGTCTTTACATAGATTTACAGGAAGTCGGAGTGAGCATGGAGGACCTTCTTCCAAGCGTAATTGGAATGATGGTTACTGGGTTTAA 1074 0.4423 MLSRLHHRNLVKLIGICIEGRRRCLVYELVRNGSVESHLHGDDKIKGMLDWEARMKIALGAARGLAYLHEDSNPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSNHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPQGQENLVTWARPLLTSREGLELLVDPSLAGSYNFDDMAKVAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTDETCGDCCSQKDSSARESDFRGDLAPSDSSWWNAGGVTPRLTYGQASSFITMEYSSGPLEEMENRPFSTSSLIGDEISLPIRHGNRSGPLRTVRSKLSLHRFTGSRSEHGGPSSKRNWNDGYWV 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1156 357 Gene3D Phosphorylase Kinase; domain 1 1 30 - -
Ssu4g1156 357 ProSiteProfiles Protein kinase domain profile. 1 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1156 357 Pfam Protein tyrosine and serine/threonine kinase 1 225 IPR001245 GO:0004672|GO:0006468
Ssu4g1156 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 76 88 IPR008271 GO:0004672|GO:0006468
Ssu4g1156 357 SUPERFAMILY Protein kinase-like (PK-like) 2 229 IPR011009 -
Ssu4g1156 357 Gene3D Transferase(Phosphotransferase) domain 1 31 251 - -
Ssu4g1156 357 MobiDBLite consensus disorder prediction 335 357 - -
Ssu4g1156 357 PANTHER OS01G0750732 PROTEIN 1 354 - -
Ssu4g1156 357 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE ALE2 1 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1156 Ssu-Chr4 18453337 18454898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1156 1 346 Receptor kinase-like Gene Family AT5G56890 63.068 7.33e-131 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Ssu4g1156 PK_Tyr_Ser-Thr 1.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1156 - - pvu:PHAVU_001G1677000 713.761