Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1151 ATGGCTGCTGCTGCCAATCCTGTAATTGGGTCTCATATTTGGGTGGAGGATCCTGATGTGGCTTGGATAGATGGTGAGGTCTTGGAGGTTAAAGGAGAAGAAATCAAAGTCCTTTGCACTTCAGGGAAGACGGTTGTTGTTAAAGCCTACAGCATTTATCATAAAGATACCGAAGTCCCACCAAGTGGAGTGGATGATATGACAAAGCTTGCATACCTGCATGAACCTGGAGTCCTAGATAATCTGAGATCCagatatgatataaatgaaatttatACTTACACTGGGAATATATTGATTGCTGTGAACCCTTTCATAAAGCTCCCTCATTTATATGATAGCCATATGATGGCACAATATAAAGGAGCAGCTTTTGGTGAGCTAAGCCCACATCCCTTTGCTGTTGCAGATGCAGCATATAGGCTTATGATAAATGAGGGAATCAGCCAGTCAATATTGGTTAGTGGTGAAAGTGGAGCTGGTAAAACAGAAAGTACTAAGTTACTCATGCGGTATCTTGCTTACATGGGTGGGAGAGCTGCTGCTGAAGGTAGAACTGTTGAGCAAAAGGTCCTGGAGTCCAATCCTGTTCTAGAAGCCTTTGGCAATGCAAAGACTGTTAGGAACAATAATTCAAGTCGTTTTGGCAAGTTTGTGGAGATTCAATTTGACCAGCAGGGAAGAATTTCAGGGGCTGCTATCAGGACTTATCTGCTTGAAAGATCACGTGTTTGTCAGGTGTCAGATCCAGAGAGGAACTATCATTGTTTCTACATGCTCTGTGCTGCACCTCCGGAGGATGTTAAAAAGTACAAATTAGGAGATCCAAGAATGtttcattatttgaatcaaTCAAATTGCTTTGAGTTGGAAGGGGTTGATGAATCTAAAGAATATAGGGATACAAGGAGAGCAATGGATATTGTTGGAATAAGTTCTGAGGAGCAGGATGCAATCTTTCAAGTTGTTGCTGCAATTTTGCATCTTGGCAACATTGAATTTGCGAAAGGGAAGGAGATAGACTCATCTATGCCCAAAGATGAAAAATCTCGGTTCCATTTACAGACTGCAGCTGAGCTTTTCATgTGTGATGCAAAGGCACTTGAAGATTCTCTTTGCAAACGTGTAATTGTTACTCGTGATGAAACAATTACAAAATGGCTGGATCCGGAAGCTGCAGTACTCAGCCGAGATGCCTTGGCTAAGATTGTGTACACAAGATTGTTTGACTGGTTggttgataaaattaataattctatTGGTCAAGACCCTGAGTCAAAATACTTAATTGGCGTGCTGGATATTTATGGTTTTGAGAGTTTCAAGACTAACAGTTTTGagcaattttgtattaatttgacCAATGAAAAGCTTCAACAACATTTTAATCAGCATGTTTTCAAAATGGAgcaagaagaatacaaaaaggAGGAAATTGATTGGAGTTACATTGAATTTGTGGACAATCAAGATATTCTGGATCTCATTGAAAAGAAACCTGGTGGCATTATTGCTCTTCTGGATGAAGCTTGCATGTTTCCTAGATCTACACATGAAACTTTCGCCCAAAAGCTGTATCAGACCTTCAAAATCCATAAAAGGTTTAGCAAGCCTAAATTATCACGTAGTGACTTCACAATTTGCCATTATGCTGGAGATGTCACTTATCAAACTGAATTTTTCCTCGACAAGAACAAAGATTATGTTGTTGCAGAGCACCAGGCACTTCTTCATGCTTCCAAATGCCCCTTTGTATCGGGCTTGTTTCCCCCTTCACCTGAGGAATCTTCTAAACAATCAAAGTTCTCTTCAATTGGTTCACGATTTAAGCAACAATTGCAAGCTTTACTTGAAATTCTCAGTGCCACTGAGCCACACTACATTCGTTGTGTAAAACCTAATAATCTTCTCAAGCCAGCaatttttgagaataaaaatgttttgctgCAACTACGATGTGGGGGAGTTATGGAGGCAATTAGGATAAGCTGTGCTGGGTATCCTACTAGAAAAACCTTTGATGAATTTGTGGATCGATTTAGCCTTCTTGCACCTGAGGCATTGGATGGAAGttCTGATGAGGTCACTGCTTGCAAGAAAATTCTAAAGAATGTTGGGCTTGAAGGCTATCAGATTGGTAAGACAAAGGTGTTTCTTCGAGCTGGTCAGATGGCAGAACTAGATACCCGTAGAAGTGAAATCTTAGGAAATTCAGCAAGCGTTATTCAGAGAAAAGTTCGTTCCTATTTGGCCCGCCAAAGTTTCATCTTGCTTCATTTGTCTGCTGTGCAGATTCAAGCTGCATGCAGAGGTCTCTGCTCATTATATCTTGAAATATTAGCTCACAGGACAACTTGCTCGGCAAGTATACGAGGGATGCGGCAGGAGGCTTCTAGTTTGGTGATTCAGAGGTGCTTCCGCATGCATATTGCTAAGAAGGCATACAAAGATTTGTATACCTCTGCTGTCTCTATCCAGACTGGTATGCGGGGGATGGCTGCTCGTTTTGAGCTACACTTTAGAAGGTGTACTAAAGCAGCAATTGTCATTCAGAGCCACTGCCGGAAATCCTTGGCACAACTTCATTTCAGAAAATTAAAGAAGGCAACAATTACAACACAATGTGCATGGAGAGGAAAAGTTGCTCGGCAAGAATTGCGAAAGCTCAAGATGGCTGCAAGAGAAACAGGAGCTCTCCAAGCTgccaaaaataaacttgaaaaaCAAGTTGAAGACCTTACATTAAGGTTGCAGCTGGAAAAACGATTGAGGgtTGACATGGAAGAAGCAAAAGCCAAAGAAAATCGAAGATTACAATCTGCTTTGCAAGAGATGCAACTTCAgtttaaagaaactaaattaCTTCTTGAAAAGGAGCGGGAGGCTACAAAAATAGCAGCAGAGAGAGTGCCTATCATACAGGAGGTTCCAGTTGTTGACCATGCTTTGTTGGAGAAGCTCAGTAGTGAGAATGAGAAACTCAAGAACTTGGTGAGTTCattggaaaagaaaattgatgaaaCGGAAAAAAGGTATGAAGAGGCAAGCAGAATTGGCGAAGAAAGGTTGAAGCAAGCTTTGGATGCAGAATCAAAAGTAATGCAGTTGAAGACTGCTATGCAAAGgCTTGAAGAGAAATTCATAGACATGGAATCTGCAAACCATATTCTTCAGAAACAATCTCTACTAAACTCATCTGTGAAAACAATAGCAGAGCACATGTCTTCCCCAGTAGCCAAGAAGTTAGAAAATGGTCACCATGCCGCAGAGGAGCAGAAAGCTGTTGATACATGTGTTACACCTGTGAAACAATTTGGTACAGAATCAGACATTAAATTGAGAAGATCTTACATTGAACGACAACATGAGAATGTTGATTCACTTGTCAACTGTGTTATGAAAAATATTGGCTTCAATCATGGAAAACCCACTGCTGCATTCACTATTTACAAATGTCTTCTCCACTGGAAATCATTTGAAGCTGAAAGAACTAGTGTATTTGATCGCCTTATCCAAATGATTGGTTCTGAAATTGAGAATCAAGATGGCAATGATCATATGGCCTATTGGCTGTCAAATACATCTGCGTTATTGTTTTTACTTGAACAAAGCCTGAAATCTGGGAGTTCAGCAAATGCTACCCCAGTTAGAAAACCACCAAATCCAACATCCCTCTTTGGAAGAATGACTATGGGTTTTCTTTCATCCCCTTCTTCTGCCAACCTTGCTGCCCCTCCATTGGATGTTGTACGCAAGGTAGAGGCTAAATACCCTGCTTTGCTTTTCAAGCAGCAGCTCACAGCCTATTTGGAGAAAATATATGGCATCATTCGGGATAATTTGAAGAAGGATTTAACACCAGTTCTTGCATTATGCATCCAGGCACCAAGAACATCAAAGGGAGGGTTACGTTCTGGCCGATCCTTTGCTAAAGATTCCCCAATGGTTCACTGGCAGAGTATTATTGAATCCCTCAATACCCTCCTCTGTACACTGAAAGAGAACTTCGTGCCTCCAGTTCTTATCCAAAAGATCTTCAGTCAAACATTCTCATTTATTAATGTACAACTCTTCAATAGTCTTCTTCTTCGTCGTGATTGTTGCACATTCACCAATGGGGAATATGTGAAAGCTGGATTAGCTGAATTAGAGTTGTGGTGCTGCCAAGCAAAGGAAGAGTATGCAGGGTCATCATGGGATGAGCTTAAGCACATAAGACAGGCCGTTGGATTCTTGGTTATTCATCAGAAGTATAGGATTTCCTATGATGAAATCATCAATGATTTATGCCCTATCTTGAGTGTCCAGCAGCTATATAGAATATGTACACTTTACTGGGATGGTAACTACAATACTCGAAGTGTATCTCCAGATGTCCTTTCAAGCATGAGGATGCTAATGGCTGAGGACTCCAATAATGCTCAGAGTGATTCTTTCTTGTTGGATGACAGTTCCAGCATCCCCTTCTCAGTGGATGATCTCTCTACATCACTGCAAGAGAAGGACTTCTCAGACATGAAACCGGCAGATGAGCTTCTCGAGAATCCAGCCTTCCAATTTTTAAATGAGTAG 4572 0.3976 MAAAANPVIGSHIWVEDPDVAWIDGEVLEVKGEEIKVLCTSGKTVVVKAYSIYHKDTEVPPSGVDDMTKLAYLHEPGVLDNLRSRYDINEIYTYTGNILIAVNPFIKLPHLYDSHMMAQYKGAAFGELSPHPFAVADAAYRLMINEGISQSILVSGESGAGKTESTKLLMRYLAYMGGRAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQQGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPPEDVKKYKLGDPRMFHYLNQSNCFELEGVDESKEYRDTRRAMDIVGISSEEQDAIFQVVAAILHLGNIEFAKGKEIDSSMPKDEKSRFHLQTAAELFMCDAKALEDSLCKRVIVTRDETITKWLDPEAAVLSRDALAKIVYTRLFDWLVDKINNSIGQDPESKYLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYKKEEIDWSYIEFVDNQDILDLIEKKPGGIIALLDEACMFPRSTHETFAQKLYQTFKIHKRFSKPKLSRSDFTICHYAGDVTYQTEFFLDKNKDYVVAEHQALLHASKCPFVSGLFPPSPEESSKQSKFSSIGSRFKQQLQALLEILSATEPHYIRCVKPNNLLKPAIFENKNVLLQLRCGGVMEAIRISCAGYPTRKTFDEFVDRFSLLAPEALDGSSDEVTACKKILKNVGLEGYQIGKTKVFLRAGQMAELDTRRSEILGNSASVIQRKVRSYLARQSFILLHLSAVQIQAACRGLCSLYLEILAHRTTCSASIRGMRQEASSLVIQRCFRMHIAKKAYKDLYTSAVSIQTGMRGMAARFELHFRRCTKAAIVIQSHCRKSLAQLHFRKLKKATITTQCAWRGKVARQELRKLKMAARETGALQAAKNKLEKQVEDLTLRLQLEKRLRVDMEEAKAKENRRLQSALQEMQLQFKETKLLLEKEREATKIAAERVPIIQEVPVVDHALLEKLSSENEKLKNLVSSLEKKIDETEKRYEEASRIGEERLKQALDAESKVMQLKTAMQRLEEKFIDMESANHILQKQSLLNSSVKTIAEHMSSPVAKKLENGHHAAEEQKAVDTCVTPVKQFGTESDIKLRRSYIERQHENVDSLVNCVMKNIGFNHGKPTAAFTIYKCLLHWKSFEAERTSVFDRLIQMIGSEIENQDGNDHMAYWLSNTSALLFLLEQSLKSGSSANATPVRKPPNPTSLFGRMTMGFLSSPSSANLAAPPLDVVRKVEAKYPALLFKQQLTAYLEKIYGIIRDNLKKDLTPVLALCIQAPRTSKGGLRSGRSFAKDSPMVHWQSIIESLNTLLCTLKENFVPPVLIQKIFSQTFSFINVQLFNSLLLRRDCCTFTNGEYVKAGLAELELWCCQAKEEYAGSSWDELKHIRQAVGFLVIHQKYRISYDEIINDLCPILSVQQLYRICTLYWDGNYNTRSVSPDVLSSMRMLMAEDSNNAQSDSFLLDDSSSIPFSVDDLSTSLQEKDFSDMKPADELLENPAFQFLNE 1523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1151 1523 Gene3D Kinesin motor domain 65 662 IPR036961 -
Ssu4g1151 1523 PANTHER MYOSIN 7 1521 - -
Ssu4g1151 1523 SMART iq_5 794 816 IPR000048 GO:0005515
Ssu4g1151 1523 SMART iq_5 865 887 IPR000048 GO:0005515
Ssu4g1151 1523 SMART iq_5 842 864 IPR000048 GO:0005515
Ssu4g1151 1523 SMART iq_5 734 756 IPR000048 GO:0005515
Ssu4g1151 1523 CDD MYSc_Myo11 76 720 IPR036018 -
Ssu4g1151 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 795 895 IPR027417 -
Ssu4g1151 1523 Gene3D - 439 623 - -
Ssu4g1151 1523 Pfam IQ calmodulin-binding motif 868 887 IPR000048 GO:0005515
Ssu4g1151 1523 Pfam IQ calmodulin-binding motif 844 864 IPR000048 GO:0005515
Ssu4g1151 1523 Pfam IQ calmodulin-binding motif 798 816 IPR000048 GO:0005515
Ssu4g1151 1523 Pfam IQ calmodulin-binding motif 738 755 IPR000048 GO:0005515
Ssu4g1151 1523 Pfam DIL domain 1345 1447 IPR002710 -
Ssu4g1151 1523 Coils Coil 889 962 - -
Ssu4g1151 1523 CDD MyosinXI_CBD 1119 1492 IPR037975 GO:0007015
Ssu4g1151 1523 ProSiteProfiles IQ motif profile. 866 895 IPR000048 GO:0005515
Ssu4g1151 1523 PANTHER MYOSIN-14 7 1521 - -
Ssu4g1151 1523 Gene3D Myosin VI head, motor domain, U50 subdomain 312 601 - -
Ssu4g1151 1523 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g1151 1523 PRINTS Myosin heavy chain signature 482 510 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g1151 1523 PRINTS Myosin heavy chain signature 429 457 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g1151 1523 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g1151 1523 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g1151 1523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 773 IPR027417 -
Ssu4g1151 1523 Coils Coil 984 1018 - -
Ssu4g1151 1523 Pfam Myosin head (motor domain) 64 720 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g1151 1523 Gene3D - 666 733 - -
Ssu4g1151 1523 ProSiteProfiles IQ motif profile. 844 872 IPR000048 GO:0005515
Ssu4g1151 1523 SMART DIL_2 1344 1451 IPR002710 -
Ssu4g1151 1523 ProSiteProfiles Dilute domain profile. 1168 1469 IPR002710 -
Ssu4g1151 1523 Pfam Myosin N-terminal SH3-like domain 10 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Ssu4g1151 1523 Coils Coil 1026 1060 - -
Ssu4g1151 1523 ProSiteProfiles IQ motif profile. 795 824 IPR000048 GO:0005515
Ssu4g1151 1523 Gene3D - 252 310 - -
Ssu4g1151 1523 ProSiteProfiles IQ motif profile. 818 847 IPR000048 GO:0005515
Ssu4g1151 1523 ProSiteProfiles Myosin motor domain profile. 62 732 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g1151 1523 SMART MYSc_2a 56 733 IPR001609 GO:0003774|GO:0005524|GO:0016459
Ssu4g1151 1523 Gene3D - 793 843 - -
Ssu4g1151 1523 Gene3D - 844 894 - -
Ssu4g1151 1523 Gene3D - 735 779 - -
Ssu4g1151 1523 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1151 Ssu-Chr4 18362738 18384460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1151 1 1522 Myosins gene family AT5G43900 74.591 0.0 2342
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1151 K10357 - gmx:100795648 2776.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1151 4 18362738 18384460 Ssu4g1151 4 18362738 18384460 ECH
Ssu4g1151 4 18362738 18384460 Ssu7g2280 7 44778426 44795609 PCT