Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1150 atgGAGAACGTGTTCCGCCTAGTCGACCACGAAGACTTCTTCTCTCGTCGTTGCATTTGGGTCAACGGCCCCGTGATCGTAGGGGCAGGTCCCTCAGGGCTAGCCACGGCAGCATGCCTTAGAGAACAAGGGGTACCCTTCATGGTTCTCGAACGTGCAGATTGCATAGCCTCACTGTGGCAAAAACGCACCTACGACAGACTCAAACTTCACCTCCCAAAGCAATTCTGCCAGCTCCCAAAACTCCCCTTCCCCGAAGACTTCCCCGAGTACCCCACAAAGAAACAGTTCATAGAGTACCTAGAATCATACGCGAAGCACTTCGAGATCAGCCCTCAGTTCAACGAGTGTGTTCTGTCCGCGAGGCACGACGAGACAAGCGGGCTGTGGCGTGTCAAGACCGTTTCCTCGAGCGGCGCAACCCGCAACGAGGTTGAGTACATTTGCAGGTGGCTCGTGGTGGCCACTGGGGAGAATGCGGAGTGTGTCGTGCCTGAGATTGAAGGGTTGAGTGAGTTCAAAGGTCATGTGATCCATGCTTGTGATTACAAGTCAGGGGAAAGCTTCAGGGGTAAGAAGGTTCTAGTTGTTGGTTGTGGCAATTCTGGCATGGAACTCTCACTTGACCTTGTAAACCACCATGCCTCACCATCCGTGGTTGTTCGTAGTTCGGTTCACGTGTTGCCTAGAGAAGTATTTGGGAAATCGACGTTTGAATTGGCGGTTATGATGCTGCAATGGCTTCCCCTTTGGCTTGTTGACAATATTCTTTTGATCTTGGCGTGGTTTGCTTTGGGGAACATTGAGAAGTTGGGGCTCAAAAGGCCTTCAATGGGTCCTTTGGAGCTGAAGAACACGAAGGGGAAGACCCCGGTTTTGGACATTGGTGCCTTGGAGAAGATTAGATCCGGCGACATAAAATTGGTGCCGGAAATCAAGAGGTTCAATGATGGAGAAGTTGAGCTTGTTAATGGTGAAAAGCTTGATATTGATGCAGTGGTGCTTGCAACCGGTTACCGCAGCAATGTCCCTTCTTGGCTTCAGGAAGGTGAATTTTTCTCCAGTAATGGATACCCAAAGATGCCCTTCCCTCACGGTTGGAAGGGAAATGCTGGGCTTTATGCTGTGGGGTTCACAAAGAGAGGGCTCGCTGGTGCTTCTTCTGATGCGGTGAAAATTGCTCAAGATATTGGCAAAGTTTGGAAAGATGAGACTAAGCAAAAGAAACAGCGCACTACTGCTTGTCATAGACGTTGCATTTCCCAGTTCTAA 1272 0.5008 MENVFRLVDHEDFFSRRCIWVNGPVIVGAGPSGLATAACLREQGVPFMVLERADCIASLWQKRTYDRLKLHLPKQFCQLPKLPFPEDFPEYPTKKQFIEYLESYAKHFEISPQFNECVLSARHDETSGLWRVKTVSSSGATRNEVEYICRWLVVATGENAECVVPEIEGLSEFKGHVIHACDYKSGESFRGKKVLVVGCGNSGMELSLDLVNHHASPSVVVRSSVHVLPREVFGKSTFELAVMMLQWLPLWLVDNILLILAWFALGNIEKLGLKRPSMGPLELKNTKGKTPVLDIGALEKIRSGDIKLVPEIKRFNDGEVELVNGEKLDIDAVVLATGYRSNVPSWLQEGEFFSSNGYPKMPFPHGWKGNAGLYAVGFTKRGLAGASSDAVKIAQDIGKVWKDETKQKKQRTTACHRRCISQF 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1150 423 Gene3D - 24 407 IPR036188 -
Ssu4g1150 423 SUPERFAMILY FAD/NAD(P)-binding domain 25 227 IPR036188 -
Ssu4g1150 423 Pfam Flavin-binding monooxygenase-like 26 344 IPR020946 GO:0004499|GO:0050660|GO:0050661
Ssu4g1150 423 SUPERFAMILY FAD/NAD(P)-binding domain 191 400 IPR036188 -
Ssu4g1150 423 PRINTS Pyridine nucleotide disulphide reductase class-II signature 189 213 - -
Ssu4g1150 423 PRINTS Pyridine nucleotide disulphide reductase class-II signature 23 45 - -
Ssu4g1150 423 PANTHER FLAVIN-CONTAINING MONOOXYGENASE 15 421 - -
Ssu4g1150 423 PRINTS FAD-dependent pyridine nucleotide reductase signature 193 211 - -
Ssu4g1150 423 PRINTS FAD-dependent pyridine nucleotide reductase signature 24 43 - -
Ssu4g1150 423 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 15 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1150 Ssu-Chr4 18318070 18319857 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1150 K11816 - gmx:100819987 802.742
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1150 4 18318070 18319857 Ssu4g1150 4 18318070 18319857 ECH
Ssu7g2282 7 44864646 44866624 Ssu4g1150 4 18318070 18319857 PCT
Ssu7g1644 7 34286073 34295050 Ssu4g1150 4 18318070 18319857 PCT