Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1147 ATGGAAACAAGCTACTCACGGACAGGCCTCATCGCGATGCATCTTCTCTTTCAAGAAGTCAATCAGATGTTGCAAGGGATCACGAGTCCTACCTTGGGTGATCAGATAGAGGATAAGCTGATTGTTTCTGACTCAATGAGAGCTTCTTCAAATAAGAAGATAAATGGAACACCCATCAAGATGCTCATAGACCAAGAAATGTCCAAAGAAGTTGTTTCCAAGCGCAGCCCACCACCAAATGTAGTTGCAAAATTAATGGGGCTTGAAGCCTTCCCACGGGGTGAGCCTAATTTATCTGTAGAGAGAAGCCATAGAGGAGATTATCCTCAACATATGTGTGGTCATTCAGGAACACCATTCAAACAGTGGCAGCTTGAAGATATGTTCATGGACAAGGAAATGCTTCATGAAGTTCATCCAAGCACAGAACAGATTGCTTACaaagataaatatgaaatatggcTGCAATCACAGAGAACAAGCAATGTAAGAGACAAGACACCAGAGAGAGAAAAGTGGACTGAAGATGTTAATGGGAAGAAAATGGCTCTCATTCGCCAGAAATTTATGGAAGCTAAACGTCTGTCTACAGATGAGACACTACGCCAGTCCAAGGAGTTTGATGATGCCTTGGAAGTTTTAAGTTCCAATAATGATCTATTAATCAGGTTATTGGATTCTCAAAATCTTTATGAACTTCAGTCTACTCCGGTAGCAGAGACAAAGCGTATTACTGTTCTTAAACCTTCGAAGATGGTTGACAATGAAAAATCTGGTGGAAAGGGGAAGAAGAACAACGAGCAGATTAGGAAACCAGCAAATGTTGGTGCTGCATGGGAGAGATACAGTCCTGGATACACTCCGGCCAGTCAGAAAGTTGATGAGTTTTCAGTTCAACCTACTCGAATAGTGGTATTGAAGCCTAGCCCTGGGAAAACACACGAGATTAAGGCTGTGGTTTCTCCAACAATGTCATCACCACAAAATCTGCAGAGTGGAAATTTCTACCAGGAACCTGAAGATGATGATGTACTGGAATCAAGAAAAGTGGCAAGTGAAATTACACAGCAAATGCATGAAAATCTGAGGAGCCATCAAAGAGATGAAACATTGTATTCTTCAGTGTTTTCCAATGGCTATACTGGTGATGAGAGTTCATTCAACAAATCAGATCATGAGTATACTGCAGGAAACTTTAGTGATTTGGAAGTTATGTCACCATCTCCAAGGCATTCTTGGGATTACATCAATCGCTGTGGCAGCCCTTTTTCTTCATCATCCTTCAGCCGTGCATCCTGTTCTCCCGAGTCATCAGTATGCAGAGAGGCTAAGAAACGTCTTTCTGAAAGATGGGCCATGATGGCATCAAATAAGGGTCCTCAAGAACAAAGGCATATGCGTAGAAGCTCTACCTTGGGTGAGATGCTTGCTCTTTCGGATATAAAGAAATCTGTAATATCTGAGCTTGAGGGTATTCATCAAGAACAGGAACCAAGTGAATCTGTTTCTTGCAGTCAAAATTTTAATGCTGAAACATGTGTGGATGGTTCTCCTAAAAACCTTTCTAGGTCAAAATCTGTTCCGGCATCTTCTACTGTTTATGAAAATGGGCTCAATGTTGAAGTTTGTGATAATGATGCTGGCAAAGCACATGGGTCTGGGAAGCTGATGAAGTCAAAGAGTATGAAATCATCACTTAAAGGGAAAGTTACGAGTTTCTTCTTCTCAAGGAATAAGAAACCAACCAGGGAAAAATCTTGTCTATCTCAATCTAAAAATGAATCCCAATCTACAGTCACTGAAGCATCAGGTTCTCCAGTAAATTCATCTGGAGTCCTTAGGGATGATGTGTCTCAAAGCTTCAACAGTGGATCCGTCGGGGAGTATTCTCTTCCAGCTCCATATGAATCATCAGGCAAAATTTTATCAGATTCTATCTCTAATGGACAAGGCGTTATACCTCTGGAGcCTGGATTGACTCTGTCAAAGCCCACGGTGCCTGGGATTTCAAGTGAAAATCAGGGTCAGCCCAGTCCAATATCAGTTTTAGAGCCTCCATTTGAAGATGATAATGCTGCTAACGAGTCCTTGGGCTGTGTGAAGGGTGGTCAGCTGGGATCACGGTTGCCTCTGAAGTCTAATTTAATTGACAAATCACCACCTATAGAATCAATAGCTCGGACCCTCTCATGGGATGATTCTTGTGCAGAGGTAGCAAGTCCATACCCATTAAAGCCATCGTTGGTTTCCCTAGACACCAAGGTAGAGGATCAAGACTGGCTTGTCTTTGTCGAGAAACTACTATCAGCTGCTGGAATCGATGATCAAGTGCAGTCTGACTCGTTTTACTCAAGATGGCATTCGCTTGAAAGCCCATTGGATCCGTCATTGAGGGACAAATATGCCAATCTCAATGACAAGGAGCCTCAGCAACTCCATGAGGCCAAGAGAAGGCAGAGGAGATCTAATCAGAAGCTTGTATTCGACTGTGTCAATGTTGCACTAATAGAAATTACTGGTTATGGATCAGAGAATTACTTGATGGGTAGGTTGTGGAGTGGGAGCCACAGCAGGCTCCAGGTCACAGAGGGTGCGGCACCCCCATTGGTGGACCTCATTGTGGTCCAGATGAAGGAGTTAATATCTAGTGCTATGAGGTCAGTTTGGGGGGATTGTGGGGACAGTAACAGCCTGGTGGTAGAGAGTGTTGTCAGAAAAGAGGTTGTGGGGAAAGGGTGGGTTGAACTAATGGGATTGGAGTTGGATATTTTGATGAAGGAAGTAGAGGGGAAGTTGCTAGAAGAACTTGTGGAGGATGCGGTGGTTTATTTGACAGGCAGGGCCTGA 2847 0.4303 METSYSRTGLIAMHLLFQEVNQMLQGITSPTLGDQIEDKLIVSDSMRASSNKKINGTPIKMLIDQEMSKEVVSKRSPPPNVVAKLMGLEAFPRGEPNLSVERSHRGDYPQHMCGHSGTPFKQWQLEDMFMDKEMLHEVHPSTEQIAYKDKYEIWLQSQRTSNVRDKTPEREKWTEDVNGKKMALIRQKFMEAKRLSTDETLRQSKEFDDALEVLSSNNDLLIRLLDSQNLYELQSTPVAETKRITVLKPSKMVDNEKSGGKGKKNNEQIRKPANVGAAWERYSPGYTPASQKVDEFSVQPTRIVVLKPSPGKTHEIKAVVSPTMSSPQNLQSGNFYQEPEDDDVLESRKVASEITQQMHENLRSHQRDETLYSSVFSNGYTGDESSFNKSDHEYTAGNFSDLEVMSPSPRHSWDYINRCGSPFSSSSFSRASCSPESSVCREAKKRLSERWAMMASNKGPQEQRHMRRSSTLGEMLALSDIKKSVISELEGIHQEQEPSESVSCSQNFNAETCVDGSPKNLSRSKSVPASSTVYENGLNVEVCDNDAGKAHGSGKLMKSKSMKSSLKGKVTSFFFSRNKKPTREKSCLSQSKNESQSTVTEASGSPVNSSGVLRDDVSQSFNSGSVGEYSLPAPYESSGKILSDSISNGQGVIPLEPGLTLSKPTVPGISSENQGQPSPISVLEPPFEDDNAANESLGCVKGGQLGSRLPLKSNLIDKSPPIESIARTLSWDDSCAEVASPYPLKPSLVSLDTKVEDQDWLVFVEKLLSAAGIDDQVQSDSFYSRWHSLESPLDPSLRDKYANLNDKEPQQLHEAKRRQRRSNQKLVFDCVNVALIEITGYGSENYLMGRLWSGSHSRLQVTEGAAPPLVDLIVVQMKELISSAMRSVWGDCGDSNSLVVESVVRKEVVGKGWVELMGLELDILMKEVEGKLLEELVEDAVVYLTGRA 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1147 948 Pfam Domain of unknown function (DUF4378) 761 939 IPR025486 -
Ssu4g1147 948 MobiDBLite consensus disorder prediction 584 619 - -
Ssu4g1147 948 Pfam Protein of unknown function (DUF3741) 186 229 IPR022212 -
Ssu4g1147 948 MobiDBLite consensus disorder prediction 663 693 - -
Ssu4g1147 948 MobiDBLite consensus disorder prediction 588 619 - -
Ssu4g1147 948 PANTHER DUF3741 FAMILY PROTEIN 60 947 - -
Ssu4g1147 948 PANTHER M REDUCTASE II SUBUNIT GAMMA, PUTATIVE (DUF3741)-RELATED 60 947 - -
Ssu4g1147 948 MobiDBLite consensus disorder prediction 664 680 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1147 Ssu-Chr4 18249978 18254375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1147 30 945 TRM (TON1 Recruiting Motif) Superfamily AT4G28760 43.100 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1147 - - gmx:100816611 1606.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1147 4 18249978 18254375 Ssu4g1147 4 18249978 18254375 ECH
Ssu4g1147 4 18249978 18254375 Ssu7g2290 7 44939256 44942710 PCT