Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1143 ATGGCACCTCAAAACTTGGCCACCCAATTAACAGCACTTGTTGTAGATGACGATATAATCAACCGAAAGATTCATCAAAGGCTGTTGGAAAGTGTTGGAGTGCAAAATCAGGGAGTGAAAAATGGCAAAGAAGCAGTGGACATTCATTGCCGTGGACAAAGATTTGACCTGATTCTCATGGACATGGATATGCCTATCATGAATGGCATTGAGgCAACAAAGGAACTTCGCTCAATGGGCATTCGTAGCATGATTGTTGGTGTGTCATCACGCTGTACGGAAGcagaaatactaaaatttatggAAGCGGGGCTGAATGATTACCATGAGAAACCTTTGAACACCGCTAAGCTTAGTTCAATTCTTGATAACATCAACCCCAATTTTACTAGTGATTAG 399 0.401 MAPQNLATQLTALVVDDDIINRKIHQRLLESVGVQNQGVKNGKEAVDIHCRGQRFDLILMDMDMPIMNGIEATKELRSMGIRSMIVGVSSRCTEAEILKFMEAGLNDYHEKPLNTAKLSSILDNINPNFTSD 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1143 132 Gene3D - 2 128 - -
Ssu4g1143 132 ProSiteProfiles Response regulatory domain profile. 11 126 IPR001789 GO:0000160
Ssu4g1143 132 CDD REC_hyHK_CKI1_RcsC-like 13 122 - -
Ssu4g1143 132 Pfam Response regulator receiver domain 13 122 IPR001789 GO:0000160
Ssu4g1143 132 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 5 129 - -
Ssu4g1143 132 SMART REC_2 10 122 IPR001789 GO:0000160
Ssu4g1143 132 SUPERFAMILY CheY-like 9 125 IPR011006 -
Ssu4g1143 132 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1143 Ssu-Chr4 18177808 18178969 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1143 10 125 Response Regulator Gene Family AT3G04280 46.610 2.95e-30 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu4g1143 Response_reg 1.7e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1143 - - gmx:100794931 218.009