Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1142 ATGGAACCTCGTCAGTTAACAACACTTATTGTTAAGGATGACATGGTGATCCGAATGATTCATCAAAAGATGCTGAACAGTGTTGGAGTGAAAAATGTAGCCgtagaaaatggaaaagaagctGTAGACATTCACAGCTCTGGACAAAATTTTGACCTAATTCTCATGGATAGGGATATGCCTGTTATGAATGGCATTGAgGCCACAAAGAAACTTCGATCAATGGGGATTCAAAGCATGATTTCTGGTGTATCAACACGCTCAGATGATTACCTAGAGAAGCCCTTGTCCCTTGCTAAGCTTACTTTGATCATTCACAAGATGAACAACTCACTTAAACACACCACGTACAAAGATATTGTTTTAACATCATACGACGTCGATAAAAAAACATGTTGGGAGATCAATGGCAAAGATTCTCTTTCCAACGCTTTTCTGATGgaggagaaaaagaaaaataaaaggagaagtGAATATGGTGCAAACCGTCAAAATCCCTTTCGTCCTTTAGCTTCGCATTATTCGGAGGGAGACATCTTATCTGTGGCTATTTGTGAATTGTGGCTGCTCTCTTGTTCCAAAAGGCAGCGAACAGGAACAGGAACAGGAACACCAGCTCCCAGCCAACACACCACACGTTCTCCTTTTGCAACAGCAATTTTCAATATGGCGAATCGGAATCACTTTGTTCCAGATTTCGATATCCAAATGGACGACGACCACGAATATCCAATTCTCACGCCTTCAGGGCTACCTCGCGAAAAGAAACCCTCCATTGCAGACGACGACATCATGGAGCTGCTGTGGCAAAACGGCCAGGTCGTGATGCAAAGCCAGAACCAGCGGTCTCTGAGAAAACCGCCGCCGGCGAGAAATTCCGACGGTGCTTCTCCCGCCGGTCCTTCCACGGCGAGGGAGATTCGACCGCAGGTGGAAAACCACAACCAGCATCTCTTCATGCAAGAAGGCGAAATGGCTTCGTGGCTTCACTATCCGATCGACGACGACGATCCTCCTTTGGATCAAAGCTTCTGCGCCGATTTCCTCTACTCGCCGCCGACCGTTAACAATGACAGAGTCATGCAAACCCTCGCGAGTACGTCTCAGCTGACGGAGCTCCGGACGCTGCCGGTGGCGGCGATGCCTCGACCTCCGATTCCGCCGCCGAACGTCGCGTACTTCTCGAGGCACAACACGAGAGCCGAGGCCGCCGCGAGGGAATCCACGGTGGTGGATTCGTGCGACACGCttgcggcggcggcggcggcggcttCGAGAGTTTCGGAGACAGTGAGGAGCGCGGCGGAGCCGACGGAGGAAGCCGGCGGGGTGGCGGCGCCTTCGGCGACGAGTGGCGACGGAGGAAGGAGCACGATGATGATGTGCGATTTGACGATGACGTCATCGCCGGGCGGTTCGAGTAGCAGCGGCGAGCCGGTGCAGGTGGCTGTGGCGGAGGACCGGAAGCGGAAGGGGCGGGAGGCGGAGGAATGGGAGTGTCAGAGCGAGGATGTTGATTTTGAATCGGAAGCAAAGAAACAAGTTCGTGGATCAGCGTCTACAAAGAGATCACGTGCCGCCGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGCGATCGGATTAATGAAAAGATGAGAGCTCTACAAGAACTTATACCTCGTTGTAATAAGTCGGACAAAGCTTCAATGCTGGATGAAGCAATTTCATACTTGAAGTCATTGCAGTTACAACTGCAgATGATGTCCATGGGATGTGGCATGATACCTATGATGTTTCCCGGAATCCAGCAGTACATGCCAGCGATTGGAATGGGGGTTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCAGTAATGCCGTTTCCCAATATGTTACCTGGTTCGGCTTTGCCAGCAGCAACTGCAGCTGCTCATTTGGGACCAAGGTTTGCCATGCCTCCTTTCTACATGCCGCATGTTCCTGCACCAGATTCATCTAGAATGCAAGCAGCAAATCAGTCAGATAATAATATGGTCACCTCAGCTGGTCCACCTGATCCAAATCAGTCACGTATCCCAAACTTCACTGATCCTTATCAGCAATATCTTGGTTCCCACCAGATGCAGTTTCAATTAATTCAGGTATTTTGTCCTCTAATGTTATTTctgatttggttttttttaaacaacGTGTGA 2181 0.4778 MEPRQLTTLIVKDDMVIRMIHQKMLNSVGVKNVAVENGKEAVDIHSSGQNFDLILMDRDMPVMNGIEATKKLRSMGIQSMISGVSTRSDDYLEKPLSLAKLTLIIHKMNNSLKHTTYKDIVLTSYDVDKKTCWEINGKDSLSNAFLMEEKKKNKRRSEYGANRQNPFRPLASHYSEGDILSVAICELWLLSCSKRQRTGTGTGTPAPSQHTTRSPFATAIFNMANRNHFVPDFDIQMDDDHEYPILTPSGLPREKKPSIADDDIMELLWQNGQVVMQSQNQRSLRKPPPARNSDGASPAGPSTAREIRPQVENHNQHLFMQEGEMASWLHYPIDDDDPPLDQSFCADFLYSPPTVNNDRVMQTLASTSQLTELRTLPVAAMPRPPIPPPNVAYFSRHNTRAEAAARESTVVDSCDTLAAAAAAASRVSETVRSAAEPTEEAGGVAAPSATSGDGGRSTMMMCDLTMTSSPGGSSSSGEPVQVAVAEDRKRKGREAEEWECQSEDVDFESEAKKQVRGSASTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQLQMMSMGCGMIPMMFPGIQQYMPAIGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFAMPPFYMPHVPAPDSSRMQAANQSDNNMVTSAGPPDPNQSRIPNFTDPYQQYLGSHQMQFQLIQVFCPLMLFLIWFFLNNV 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1142 726 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 525 574 IPR011598 GO:0046983
Ssu4g1142 726 MobiDBLite consensus disorder prediction 451 480 - -
Ssu4g1142 726 SMART REC_2 6 105 IPR001789 GO:0000160
Ssu4g1142 726 CDD bHLH_AtPIF_like 525 588 - -
Ssu4g1142 726 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 227 709 IPR031066 -
Ssu4g1142 726 MobiDBLite consensus disorder prediction 660 689 - -
Ssu4g1142 726 Gene3D - 520 583 IPR036638 GO:0046983
Ssu4g1142 726 MobiDBLite consensus disorder prediction 430 533 - -
Ssu4g1142 726 ProSiteProfiles Response regulatory domain profile. 7 120 IPR001789 GO:0000160
Ssu4g1142 726 MobiDBLite consensus disorder prediction 483 498 - -
Ssu4g1142 726 CDD REC_hyHK_CKI1_RcsC-like 9 105 - -
Ssu4g1142 726 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 523 591 IPR036638 GO:0046983
Ssu4g1142 726 MobiDBLite consensus disorder prediction 277 304 - -
Ssu4g1142 726 Pfam Helix-loop-helix DNA-binding domain 529 575 IPR011598 GO:0046983
Ssu4g1142 726 MobiDBLite consensus disorder prediction 661 689 - -
Ssu4g1142 726 Pfam Response regulator receiver domain 9 91 IPR001789 GO:0000160
Ssu4g1142 726 SUPERFAMILY CheY-like 5 110 IPR011006 -
Ssu4g1142 726 SMART finulus 531 580 IPR011598 GO:0046983
Ssu4g1142 726 Gene3D - 1 118 - -
Ssu4g1142 726 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 227 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1142 Ssu-Chr4 18139934 18164228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1142 227 580 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 44.652 3.15e-67 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Ssu4g1142 Response_reg 7e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1142 - - gmx:100797225 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1142 4 18139934 18164228 Ssu4g1142 4 18139934 18164228 ECH
Ssu4g1142 4 18139934 18164228 Ssu7g2295 7 45043888 45048614 PCT