Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1130 ATGAGGTTCAACACGAGTGCCATCAAAACGACGTCGGATGGAGCGTGGCAGGGCGATAATCCCCTCAACCACGCTCTTCCTTTGTTGATCATTCAAACCGTCCTAGTAGTCTTCGTCAGCCGCACCCTCGCCTTTCTCTTCAAACCCCTTCGTCAACCCAAAGTTGTCGCGGAGATTATTGGTGGAATTTTGCTGGGACCTTCTGCTATTGGGCGCAACAAAAAGTTCATGCAAATAGTGTTCCCTTCATGGAGCACCACCATGCTGGAATCAGTGGCCAGTCTTGGCCTCttattctatctatttttagtGGGTCTGGAGCTGGACCTTGGCACGATTAGCCGGAGTGGGAAGCGAGCTTTCAACATCGCGGTGGCCGGAATAATCCTCCCCTTTCTCTTCGCCGTGGGAGTCACCTTCCTGCTCCAGAGAACCATCCGATTTGAAAACCATAACATTGGCTACGTTCAGCACTTCGTCTTCTTGGGGGTTTCTCTGTCCATCACCGCTTTCCCTGTGCTCGCGCGCATCCTTGCGGAGCTCAAGCTGTTGACAACAAGTGTGGGAGAAACCGCCATGGCAGCTGCAGCCTTCAACGACGTCACTGCGTGGGTGTTATTGGCCCTGGCCGTGGCTTTGGCTGATCAGAGACACAAAAGCAGCATATTCACCTCAATATGGGTGCTCTTATCAGGAGTGGCGTTTGTTGCCGTCATGATGATCCTGGTTCGACCGGTGATGAACCGTGTCGCTCGCAAGTGTTGTCATGAACATGACGTGTTCCACGAAACCTTTGTATGTTTGATCCTTGCGGGAGTAATGTTATCAGGATTCGTGACAGATATGATAGGGATACATTCAATTTTTGGGGGGTTTATTTTTGGGCTAACGATTCCGAAAGGAAGTGAATTTGCAAGCAGGTTGACGAAGAGAATTGAGGACTTCGTGTCCACCTTGCTACTTCCCTTGTACTTTGCTTCAAGTGGTTTGAAAACTAATGTGACGAAGTTACAGAGTCTGGTGGACTGGGGGCTTCTTCTGCTGGTTACATCCACCGCTTGCGTGGGGAAAATTTTGGGAACGTTTGCGGTGGCGGTGATGTGCATGGTGCCGGTGAGGGAATCCTTGGCACTCGGAGTGTTGATGAACACTAAAGGGTTGGTGGAGCTAATCGTTCTCAATATTGGCAGGGAGAAGAAGGTCCTTAACGACGAGATGTTTACCATCCTGGTGCTCATGGCAATCTTCACCACCTTCGTTACAACTCCAGTAGTCTTGGCCATATATAAACCCTCTCGTATTGTAAACTCGGGATCGCAAAAACCATCGCGGCTGACAGACTTGCAAGAGAAGCTTCGCATTCTTGCTTGCGTCCATGGACCTGGCAACATACCCTCACTAATCAACTTCATTGAATCAATTCGAGCCACCAACAAGTCTCGGCTCAAACTGTACGTGATGCAACTTACTGAACTCACTGATAGCTCGTCCTCCATCGTGATGGTTCAACGCAGCCGGAAGAATGGTTTTCCCTTCATCGACCGAATCCGAAGGTGTGAAATGCAAGAGCAAATTGCCACAGCACTCCAGGCTTATGGTGGAGTGGGTCAAGTTACCGTGCATTATTTGACATCCATCTCTTTATTGCCAACAATGCACGAGGACATATGCCACGTTGCAGAAAAGAAAGGTGTGGCAATGATCATATTGCCCTTCCACAAAAGGTGGGGTGGGGAAGATGAACAGGGGACAGAAGACTTAGGGCAGAGTTGGAGGGAAGTCAATCAGAGGGTGCTTCAAAATGCACCCTGCTCTGTTGCAGTGCTAGTCAGCCGTGGGGGAGGCAGAAGGAACGAACAAGGACCTGAGACCAATGTTGCATCAACTGCAAGGAAAAGGGTGTGCATAATTTTCATTGGTGGACCTCATGATCGCAAGGTTTTGGAGTTAGGTGGCAGAATGGCAGAGCATCCAGCAACTAAGCTGCTTTTTGTGAGATTCACTTCATACGAAGAAGCTGAGGACGACGGACACAACCATAACTCATCAACTTCCACCAACAACTGGGAAAAAGAGAAGgaGTTGGATGAGGAGGCAGTAAACGAGTTCAGGCTAAATGGCAGGAATCAGTGGAGTACATTGAAAAAAACGCAACCAACATAA 2163 0.4882 MRFNTSAIKTTSDGAWQGDNPLNHALPLLIIQTVLVVFVSRTLAFLFKPLRQPKVVAEIIGGILLGPSAIGRNKKFMQIVFPSWSTTMLESVASLGLLFYLFLVGLELDLGTISRSGKRAFNIAVAGIILPFLFAVGVTFLLQRTIRFENHNIGYVQHFVFLGVSLSITAFPVLARILAELKLLTTSVGETAMAAAAFNDVTAWVLLALAVALADQRHKSSIFTSIWVLLSGVAFVAVMMILVRPVMNRVARKCCHEHDVFHETFVCLILAGVMLSGFVTDMIGIHSIFGGFIFGLTIPKGSEFASRLTKRIEDFVSTLLLPLYFASSGLKTNVTKLQSLVDWGLLLLVTSTACVGKILGTFAVAVMCMVPVRESLALGVLMNTKGLVELIVLNIGREKKVLNDEMFTILVLMAIFTTFVTTPVVLAIYKPSRIVNSGSQKPSRLTDLQEKLRILACVHGPGNIPSLINFIESIRATNKSRLKLYVMQLTELTDSSSSIVMVQRSRKNGFPFIDRIRRCEMQEQIATALQAYGGVGQVTVHYLTSISLLPTMHEDICHVAEKKGVAMIILPFHKRWGGEDEQGTEDLGQSWREVNQRVLQNAPCSVAVLVSRGGGRRNEQGPETNVASTARKRVCIIFIGGPHDRKVLELGGRMAEHPATKLLFVRFTSYEEAEDDGHNHNSSTSTNNWEKEKELDEEAVNEFRLNGRNQWSTLKKTQPT 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1130 720 Gene3D - 28 434 IPR038770 -
Ssu4g1130 720 Pfam Sodium/hydrogen exchanger family 34 424 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu4g1130 720 MobiDBLite consensus disorder prediction 673 699 - -
Ssu4g1130 720 Gene3D - 479 709 - -
Ssu4g1130 720 PANTHER CATION/H + ANTIPORTER 8 706 - -
Ssu4g1130 720 PANTHER CATION/H+ EXCHANGER 3 8 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1130 Ssu-Chr4 17941393 17948454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1130 76 720 Antiporter Super Family AT3G53720 57.965 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1130 - - gmx:100799165 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1130 4 17941393 17948454 Ssu4g1130 4 17941393 17948454 ECH