Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1129 ATGGCGGCGTCGCGGCGGCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTGGACTGTTCCCAGAAAAACCCGCAATGGGCCTCCGTGTCGTACGGCGTCTTCATGTGCCTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGCGTGCACATCTCGTTCGTGCGATCCGTGACGATGGACTCGTGGTCCGAAGTCCAGATCAAGAAGATGGAGGCCGGAGGCAACGACAAGCTCAACGCGTTCCTCGCGCAATACGGTATCCCCAAGGACACCGACATCGTCGCCAAGTACAACTCCAACGCCGCCGCCGTCTACCGCGACCGCATTCAGGCCCTCGCCGACGGCCGCCCCTGGCGGGACCCCCCCGTCGTCAAGGAAGGCGTCCGCTCCGCAGCCAAGGGGAAGCCGCCGCTCGCGGCCACCGGCAACAACGGAGGATGGGATAATTGGGACGCCGACGAGGGGCTTGGATCCGCGAGGGGCTCGGATCTCCGGCGGAACCAGTCCGCCGGCGATGTCCGGGGTTTCGGCGGCGGCGGCGGGAGCGTGGCGAGGTCGAAGTCCACGGAAGAGATGTACACGCGGGCGCAGTTGGAGACCTCTGCCGCCAACAAGGAAGGGTTCTTCGCGAGGAAGATGGCGGAGAATGACTCGCGGCCGGAGGGGCTTCCGCCGTCGCAGGGTGGCAAGTATGTTGGGTTCGGATCTAGCCCCGCCCCGACACAGAGGAGTCATCCGCAAAGCGATTATTTCTCTGTCGTTTCGCAGGGATTTGGTAAATTATCGTTGGCTGCTGCTTCTGCCGCTCAATCTGCTGCTAATGTTGTTCAGGCCGGGACAAAAGAGATCACTGCCAAGGTTAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTCAATGTTGTCTCTCAGAAGACATCAGAGATTGGACAAAGGACTTGGGGTATAATGAGAGGGGTCATGGCAATTGCTTCACAAAAGGTTGAGGAATACACTAGAGATAACCCAAATTGGATGTCTGATAACTGGCAAcgaaatgaaaatgttaaaaatggtTTCTATCAGGAGTTCAATCAAGAGAATAAAGGCTGGAATTCTTCTACCAGAGAAGGACAACATTCTTCAGGTGGACAAACAAATACTTATCAGTCAAGCTCTTGGGATGATTTGGACCACAAAGGTTCCAGGAAGGAAGAACCAGCTAAAGGATCAGCTCCTCAGTCATCAGGTGGGCAGTTTGATACTTGTAACTCGAGCTCTTGGGACGATTGGGATCATGAAGATACAAGGAAGAAAGAACCAGCTAATGGGTCAGCTGCCCATAGCAGTGATGGTTGGGCTGGATGGGATAATGCCAAAGATGATGGATTTGATGATATCTACGGGAGTGCATCTAATAATAAAGGTGTTGGTCATAATGAGAAGTCGGGTGTTGCCTGGACAGGAGGAGGCTTTCTCTAA 1470 0.5449 MAASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEVQIKKMEAGGNDKLNAFLAQYGIPKDTDIVAKYNSNAAAVYRDRIQALADGRPWRDPPVVKEGVRSAAKGKPPLAATGNNGGWDNWDADEGLGSARGSDLRRNQSAGDVRGFGGGGGSVARSKSTEEMYTRAQLETSAANKEGFFARKMAENDSRPEGLPPSQGGKYVGFGSSPAPTQRSHPQSDYFSVVSQGFGKLSLAAASAAQSAANVVQAGTKEITAKVKEGGYDYKVNETVNVVSQKTSEIGQRTWGIMRGVMAIASQKVEEYTRDNPNWMSDNWQRNENVKNGFYQEFNQENKGWNSSTREGQHSSGGQTNTYQSSSWDDLDHKGSRKEEPAKGSAPQSSGGQFDTCNSSSWDDWDHEDTRKKEPANGSAAHSSDGWAGWDNAKDDGFDDIYGSASNNKGVGHNEKSGVAWTGGGFL 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1129 489 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Ssu4g1129 489 Gene3D Arf GTPase activating protein 1 124 IPR038508 -
Ssu4g1129 489 MobiDBLite consensus disorder prediction 129 195 - -
Ssu4g1129 489 CDD ArfGap_ArfGap1 3 117 - -
Ssu4g1129 489 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Ssu4g1129 489 MobiDBLite consensus disorder prediction 217 250 - -
Ssu4g1129 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 412 - -
Ssu4g1129 489 MobiDBLite consensus disorder prediction 365 391 - -
Ssu4g1129 489 MobiDBLite consensus disorder prediction 423 440 - -
Ssu4g1129 489 MobiDBLite consensus disorder prediction 365 489 - -
Ssu4g1129 489 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Ssu4g1129 489 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Ssu4g1129 489 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Ssu4g1129 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 412 IPR044519 GO:0005096|GO:0016192
Ssu4g1129 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 409 489 - -
Ssu4g1129 489 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 409 489 IPR044519 GO:0005096|GO:0016192
Ssu4g1129 489 MobiDBLite consensus disorder prediction 408 422 - -
Ssu4g1129 489 SUPERFAMILY ArfGap/RecO-like zinc finger 5 113 IPR037278 -
Ssu4g1129 489 SMART arf_gap_3 1 120 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1129 Ssu-Chr4 17935300 17939515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1129 5 91 C2H2 Transcription Factor Family AT4G21160 48.864 4.02e-22 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1129 K12492 - gmx:100778302 836.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1129 4 17935300 17939515 Ssu4g1129 4 17935300 17939515 ECH
Ssu4g1129 4 17935300 17939515 Ssu7g2305 7 45270602 45274705 PCT