Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1124 ATGACGTCGTTCTTGAAGCCTGAGAATGCTCTCAAAAGGGCAGAAGAATTAATCAATGTTGGGCAGAAGCAGGATGCTTTGCAGACTCTTCATGACCTCATTACTTCGAAGAGATACAGAGCATGGCAGAAGACACTTGAAAGGATTATGTTCAAGTACGTGGAACTGTGTGTAGACATGCGCAAAGGACGCTTTGCAAAGGATGGGCTCATTCAGTATAGGATTATTTGTCAGCAAGTGAATGTTAGTTCGCTGGAGGAGGTGATCAAGCATTTCATGCACCTGTCAACTGAGAAAGCTGAACAAGCCCGTAGCCAGGCACAGGCATTAGAAGAAGCCCTTGATGTTGATGATTTAGAGGCAGATAAAAGGCCAGAGGACTTGATGTTAAGCTATGTCAGTGGTGAGAAAGGAAAAGACAGATCTGATAGGGAGCTTGTTACCCCATGGTTTAAATTTCTTTGGGAAACATACAGGACAGTGCTTGAAATATTGCGGAACAACTCAAAACTGGAAGCTTTATATGCTATGACAGCTCATCGAGCTTTCCAGTTCTGTAAGCAATATAAACGAACAACAGAGTTCCGCAGACTCTGTGAAATCATAAGAAACCATTTGGCTAATCTTAATAAATATCGTGACCAACGAGACCGCCCTGATCTTTCAGCTCCTGAAAGCTTACAACTGTATCTTGATACAAGAGTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCAGATCAGTGGAGGATATACATGGACTGATGTGCATGGTCAAGAAAACGCCCAAGCCGTCCTTGATGGTTGTTTACTATGTGAAGCTGACAGAAATATTTTGGATATCATCAAGTCATCTTTATCATGCATATGCATGGTTCAGGctctttttattacaaaaaagcTTCAATAAGAATCTGAGTCAGAAGGATTTGCAATTAATAGCCTCATCTGTTGTTCTGGCTGCACTTTCAGTGCCTCCTCATGATCGCACCCATGGTGCATCTCATTTGGAACTGGAGcatgaaaaagagagaaatttgaGGATGGCTAATCTCATTGGCTTTAATCTTGAAACTAAACCTGAAAGCAGAGAAATGCTCTCAAGGTCATCACTTCTCGCTGAACTGGCATCCAAGGGTGTGATGTCTTGTGTAACTCAGGAAGTGAAGGACATTTACCATCTTTTGGAGCATGAATTTCTTCCCTCAGATCTTGCATTAAAAGCACTGCCCTTGTTAACTAAAATCTCAAAGTTAGGGGGCAAGCTTTCTACTGCTTCATCTGTTCCGGAGGTGCAATTGTCTCAGTATGTCCCAGCACTGGAAAGACTTGCTACCATGAGGTTGCTGCAGCAGGTGTCTAATGTGTACCAGACAATGAAGATTGAGACCTTATCTGGGATGATCCCCTTCTTTGATTTTTCTGTTGTGGAAAAGATTTCTGTAGATGCTGTTAAGCAGAAGTTTGTATCAATGAAAGTTGATCACATGAAAAATGTTGTGATTTTTTGCAAGACGAGTCTTGAGTCTGATGGCTTAAGGGATCACTTGGCCAATTTGCTGAACAATTGA 1587 0.4127 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRVEQLKIATELELWQEAFRSVEDIHGLMCMVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLETKPESREMLSRSSLLAELASKGVMSCVTQEVKDIYHLLEHEFLPSDLALKALPLLTKISKLGGKLSTASSVPEVQLSQYVPALERLATMRLLQQVSNVYQTMKIETLSGMIPFFDFSVVEKISVDAVKQKFVSMKVDHMKNVVIFCKTSLESDGLRDHLANLLNN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1124 528 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Ssu4g1124 528 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT A 1 525 - -
Ssu4g1124 528 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 525 IPR027512 GO:0005852
Ssu4g1124 528 SMART PINT_4 441 526 IPR000717 -
Ssu4g1124 528 Gene3D UVR domain 217 268 - -
Ssu4g1124 528 Coils Coil 93 120 - -
Ssu4g1124 528 Gene3D - 352 496 - -
Ssu4g1124 528 Gene3D - 269 342 - -
Ssu4g1124 528 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 526 - -
Ssu4g1124 528 Pfam PCI domain 373 508 IPR000717 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1124 1 523 Eukaryotic Initiation Factors Gene Family AT4G11420 83.174 0.0 925
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1124 K03254 - gmx:100803796 984.556