Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1111 ATGGCTGGTTATAAACAAAAACTGTTTAACAGCTTGAAGCCATTCATAGGTGTAGTGTTCTTACAGTTTGGATATTCTGGTATGGATGTTTTATCCAAAGCTGCACTGAACAAGGGAATGAGTAACTATGTATTCGTCGTGTACCGTCATGTTTTTGCCTTTGTTGTCATGGCCCCTTTTGCAGTGGTTTTGGAGAAGAAAGGAAGGCCGAAGATGACATTTTCAATCTTCATGAAGATAATAGTCCTCAGCTTGCTAGAGCCAGTTATTgaccaaaatttatattttttgggaatGAAGTACACCACAGCAACCTTTGCTGTTTCCATGTACAATGTCCTCCCTGCCATTACATTTGTCATGGCTTGGATTCTTAGGCTTgagaagataaaatttaaaagtatacgCAGTCAAGCAAAGGTGGTCGGGACTTTAGCCACCGTTGCAGGTGCCATGGTCATGACACTGATTAAGGGCCCAATACTTGAACTTTTTGGAACACACGGAAGCAGTACCCACAACCAGCAAAATGGTGGGGTAAATCTTCAACATGCAATAAAGGGATCAGTGATGATCACAATTGGCTGCTTTAGTTGCGCTTGTTTCATGATTCTCCAAGCTATTACCATTGAAGCCTACCCAGCTGAGCTCTCTCTGACAGCATGGATATGCCTATTGGGAACAGTTGAAGGTGGCATATTGGCCCTGATTATGGAAAGGAAAAATCTTTCGGCTTGGTCTCTGAAATGGGATACTAAACTGCTGGCTGCTGTCTACAGTGGCATAGTTTGCTCAGGAATGGCTTATTACATACAAGGAGCAGTGATGAAAGATAGAGGCCCGGTCTTTGTAACAACTTTTAATCCCCTCGGCATGGTCATTGTGGCTATCATGGGCTCCTTCTTTCTGGCTGAACAAATGTTCCTTGGGAGGGCGGTCGGAgctattgtaattattttaggaCTGTATCTTGTGGTTTGGGGTAAAAGCAAAGACTACGAATCATCAAGTCCAGTTACTAAAGAGCATATATTACCAGCCAAGCAAACAGTAGATGAGAGCTACGGCAAAGAGGAGCATTCGAATTACGAGGTCGTCACTATCAGTAACTTAGGCGCGGGAAACATAGCACGAGACGAACAAGTATGA 1149 0.4143 MAGYKQKLFNSLKPFIGVVFLQFGYSGMDVLSKAALNKGMSNYVFVVYRHVFAFVVMAPFAVVLEKKGRPKMTFSIFMKIIVLSLLEPVIDQNLYFLGMKYTTATFAVSMYNVLPAITFVMAWILRLEKIKFKSIRSQAKVVGTLATVAGAMVMTLIKGPILELFGTHGSSTHNQQNGGVNLQHAIKGSVMITIGCFSCACFMILQAITIEAYPAELSLTAWICLLGTVEGGILALIMERKNLSAWSLKWDTKLLAAVYSGIVCSGMAYYIQGAVMKDRGPVFVTTFNPLGMVIVAIMGSFFLAEQMFLGRAVGAIVIILGLYLVVWGKSKDYESSSPVTKEHILPAKQTVDESYGKEEHSNYEVVTISNLGAGNIARDEQV 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1111 382 PANTHER WAT1-RELATED PROTEIN 9 352 - -
Ssu4g1111 382 Pfam EamA-like transporter family 21 154 IPR000620 GO:0016020|GO:0016021
Ssu4g1111 382 Pfam EamA-like transporter family 187 326 IPR000620 GO:0016020|GO:0016021
Ssu4g1111 382 PANTHER WAT1-RELATED PROTEIN 9 352 IPR030184 GO:0016021|GO:0022857
Ssu4g1111 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
Ssu4g1111 382 SUPERFAMILY Multidrug resistance efflux transporter EmrE 226 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1111 Ssu-Chr4 17659899 17662540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1111 5 372 Nodulin-like Gene Family AT2G37460 62.500 1.30e-168 474
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1111 - - gmx:100777050 682.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1111 4 17659899 17662540 Ssu4g1111 4 17659899 17662540 ECH
Ssu4g1111 4 17659899 17662540 Ssu7g2317 7 45469049 45474349 PCT