Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1107 ATGAAGAGACAGAGAGATATGGAAGGGTTAGAGAGCATAGATTTGGCAAATTGTCTAATGCTGCTCTCTCGTccccaacaaaaaaatttcGAGGCCATAGAATTTGAGTGCAAGACATGCAACCGCAAGTTCTCGTCCTTTCAAGCATTGGGTGGCCACAGGGCTAGCCACAAAAGATCAAAACTAGACGGGGATGAACTCAAAGCACGTGCTACATCTCCAAGTTTGGGAAATAAACCCAAAATGCACGAGTGTTCCATTTGTGGACAGGAATTCTCATTGGGACAGGCACTTGGGGGCCACATGAGAAGGCACAGAGCTGCCGTCAACGGAGAGTTTTCTTCAATAAAAGAGGTTGTTACACAAGTACCACTTTTGAAAAGATCAAATAGCACGAGGGTAATTATGTGCTTGGACTTGAACCTAACACCGTTAGAGAACGACTTGAAGTTATTGTTTGGAAATATGGCACCGAATGTTGGCGCCTTAGTTTGA 495 0.4303 MKRQRDMEGLESIDLANCLMLLSRPQQKNFEAIEFECKTCNRKFSSFQALGGHRASHKRSKLDGDELKARATSPSLGNKPKMHECSICGQEFSLGQALGGHMRRHRAAVNGEFSSIKEVVTQVPLLKRSNSTRVIMCLDLNLTPLENDLKLLFGNMAPNVGALV 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1107 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 83 105 IPR013087 -
Ssu4g1107 164 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Ssu4g1107 164 Gene3D Classic Zinc Finger 33 105 - -
Ssu4g1107 164 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Ssu4g1107 164 SUPERFAMILY beta-beta-alpha zinc fingers 35 105 IPR036236 -
Ssu4g1107 164 ProSitePatterns Zinc finger C2H2 type domain signature. 85 105 IPR013087 -
Ssu4g1107 164 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 159 - -
Ssu4g1107 164 Pfam C2H2-type zinc finger 83 107 - -
Ssu4g1107 164 Pfam C2H2-type zinc finger 35 59 - -
Ssu4g1107 164 PANTHER ZINC FINGER PROTEIN ZAT5 1 159 - -
Ssu4g1107 164 SMART c2h2final6 35 57 IPR013087 -
Ssu4g1107 164 SMART c2h2final6 83 105 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1107 Ssu-Chr4 17581735 17582229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1107 1 154 C2H2 Transcription Factor Family AT2G37430 49.102 8.87e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g1107 zf-C2H2_6 6.6e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1107 - - gmx:100806997 281.952