Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1106 ATGAAGAGacagaaagaaaatgaagaagtaGAGAACTTATTTATGGCAACTTGTTTGAAAATGGTCTCTCAAGCACGAGATACCAATCCCCATGAAAGTCCATCCCGAGAAGCATTTGAGTGCAAGACCTGTAACCGCAAGTTCACGTCGTTTCAAGCGTTGGGTGGCCACAGGGCTAGCCACAAGAGGCCAAAACTTGAGGATGGGGAAGAACTCAAACCCAAAATACACCAGTGCTCAATTTGTGGTCAGGGATTCTCTCTGGGTCAGGCACTGGGAGGCCACATGAGAAAACACAGAGATGCcatcattgaaggattttcttCTATAAACCATGATGTTGCACTAGGTCCAGTCTTAAAGAGATCCAGCAGTAGTAGTGCAAGGACCACGTGCTTGGACCTCAACTTAACGCCTTTGGAGAATGGCTTGAAGTTATTGTTCGGGATGACAACCCCGCCTAAAGTTAATATTTCTTTGTGa 483 0.4265 MKRQKENEEVENLFMATCLKMVSQARDTNPHESPSREAFECKTCNRKFTSFQALGGHRASHKRPKLEDGEELKPKIHQCSICGQGFSLGQALGGHMRKHRDAIIEGFSSINHDVALGPVLKRSSSSSARTTCLDLNLTPLENGLKLLFGMTTPPKVNISL 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1106 160 SUPERFAMILY beta-beta-alpha zinc fingers 38 99 IPR036236 -
Ssu4g1106 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 39 66 IPR013087 -
Ssu4g1106 160 Gene3D Classic Zinc Finger 36 99 - -
Ssu4g1106 160 Pfam C2H2-type zinc finger 77 101 - -
Ssu4g1106 160 Pfam C2H2-type zinc finger 38 64 - -
Ssu4g1106 160 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 32 150 - -
Ssu4g1106 160 ProSiteProfiles Zinc finger C2H2 type domain profile. 77 99 IPR013087 -
Ssu4g1106 160 PANTHER ZINC FINGER PROTEIN ZAT5 32 150 - -
Ssu4g1106 160 SMART c2h2final6 77 99 IPR013087 -
Ssu4g1106 160 SMART c2h2final6 39 61 IPR013087 -
Ssu4g1106 160 ProSitePatterns Zinc finger C2H2 type domain signature. 79 99 IPR013087 -
Ssu4g1106 160 ProSitePatterns Zinc finger C2H2 type domain signature. 41 61 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1106 Ssu-Chr4 17576773 17577255 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1106 1 160 C2H2 Transcription Factor Family AT2G37430 46.893 7.91e-44 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g1106 zf-C2H2_6 2.3e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1106 - - gmx:100800759 213.772
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1106 4 17576773 17577255 Ssu4g1106 4 17576773 17577255 ECH
Ssu4g1106 4 17576773 17577255 Ssu7g2323 7 45561175 45561708 PCT