Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu4g1106 | ATGAAGAGacagaaagaaaatgaagaagtaGAGAACTTATTTATGGCAACTTGTTTGAAAATGGTCTCTCAAGCACGAGATACCAATCCCCATGAAAGTCCATCCCGAGAAGCATTTGAGTGCAAGACCTGTAACCGCAAGTTCACGTCGTTTCAAGCGTTGGGTGGCCACAGGGCTAGCCACAAGAGGCCAAAACTTGAGGATGGGGAAGAACTCAAACCCAAAATACACCAGTGCTCAATTTGTGGTCAGGGATTCTCTCTGGGTCAGGCACTGGGAGGCCACATGAGAAAACACAGAGATGCcatcattgaaggattttcttCTATAAACCATGATGTTGCACTAGGTCCAGTCTTAAAGAGATCCAGCAGTAGTAGTGCAAGGACCACGTGCTTGGACCTCAACTTAACGCCTTTGGAGAATGGCTTGAAGTTATTGTTCGGGATGACAACCCCGCCTAAAGTTAATATTTCTTTGTGa | 483 | 0.4265 | MKRQKENEEVENLFMATCLKMVSQARDTNPHESPSREAFECKTCNRKFTSFQALGGHRASHKRPKLEDGEELKPKIHQCSICGQGFSLGQALGGHMRKHRDAIIEGFSSINHDVALGPVLKRSSSSSARTTCLDLNLTPLENGLKLLFGMTTPPKVNISL | 160 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu4g1106 | 160 | SUPERFAMILY | beta-beta-alpha zinc fingers | 38 | 99 | IPR036236 | - | |
Ssu4g1106 | 160 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 39 | 66 | IPR013087 | - | |
Ssu4g1106 | 160 | Gene3D | Classic Zinc Finger | 36 | 99 | - | - | |
Ssu4g1106 | 160 | Pfam | C2H2-type zinc finger | 77 | 101 | - | - | |
Ssu4g1106 | 160 | Pfam | C2H2-type zinc finger | 38 | 64 | - | - | |
Ssu4g1106 | 160 | PANTHER | AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED | 32 | 150 | - | - | |
Ssu4g1106 | 160 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 77 | 99 | IPR013087 | - | |
Ssu4g1106 | 160 | PANTHER | ZINC FINGER PROTEIN ZAT5 | 32 | 150 | - | - | |
Ssu4g1106 | 160 | SMART | c2h2final6 | 77 | 99 | IPR013087 | - | |
Ssu4g1106 | 160 | SMART | c2h2final6 | 39 | 61 | IPR013087 | - | |
Ssu4g1106 | 160 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 79 | 99 | IPR013087 | - | |
Ssu4g1106 | 160 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 41 | 61 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu4g1106 | Ssu-Chr4 | 17576773 | 17577255 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu4g1106 | 1 | 160 | C2H2 Transcription Factor Family | AT2G37430 | 46.893 | 7.91e-44 | 141 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Ssu4g1106 | zf-C2H2_6 | 2.3e-08 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu4g1106 | - | - | gmx:100800759 | 213.772 |