Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1105 ATGATATCGTCAGCAATGAAGAGGCAGCGAGATAATGAAGGGTCAGAGATCTTAGATTTGGCGAATTGTCTTATGCTTTTCTCTTGCCCACAAGAAAGCAACATGGCACAACAGAAAGGTTTTGGGGGTGTGGAATTTGAGTGCAAGACCTGCAACCGCAAGTTCTCGTCATTTCAAGCACTGGGTGGCCACAGGGCTAGTCACAAGAGGCAGAAACTAGAGGATGAAGAACTCAAAGAACAGGCCAAAACTCTTAGCTTGTGGAACAAACCAAAAATGCACGAGTGCTCTATTTGTGGCCTGGAATTCTCTCTGGGCCAGGCTCTGGGAGGCCACATGAGAAAACACAGAGCTGCAATCAACGAAGGGTTCCCTTCTATCAACCACGTTATTGCGAAAACCCCAGTTCTCAAAAGGTCGAATAGCACCAGGGTTATGTGCTTGGACTTGGAGTTACACCTTTAG 465 0.4688 MISSAMKRQRDNEGSEILDLANCLMLFSCPQESNMAQQKGFGGVEFECKTCNRKFSSFQALGGHRASHKRQKLEDEELKEQAKTLSLWNKPKMHECSICGLEFSLGQALGGHMRKHRAAINEGFPSINHVIAKTPVLKRSNSTRVMCLDLELHL 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1105 154 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 6 154 - -
Ssu4g1105 154 PANTHER ZINC FINGER PROTEIN ZAT5 6 154 - -
Ssu4g1105 154 ProSitePatterns Zinc finger C2H2 type domain signature. 48 68 IPR013087 -
Ssu4g1105 154 Gene3D Classic Zinc Finger 44 116 - -
Ssu4g1105 154 SUPERFAMILY beta-beta-alpha zinc fingers 46 116 IPR036236 -
Ssu4g1105 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 94 116 IPR013087 -
Ssu4g1105 154 ProSitePatterns Zinc finger C2H2 type domain signature. 96 116 IPR013087 -
Ssu4g1105 154 ProSiteProfiles Zinc finger C2H2 type domain profile. 46 73 IPR013087 -
Ssu4g1105 154 Pfam C2H2-type zinc finger 94 118 - -
Ssu4g1105 154 Pfam C2H2-type zinc finger 46 71 - -
Ssu4g1105 154 SMART c2h2final6 46 68 IPR013087 -
Ssu4g1105 154 SMART c2h2final6 94 116 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1105 Ssu-Chr4 17566886 17567350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1105 6 152 C2H2 Transcription Factor Family AT2G37430 43.949 2.64e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu4g1105 zf-C2H2_6 8.4e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1105 - - gmx:100500607 275.404