Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1102 ATGGAGACGCAGCGGATTGTCGAGTTTCCGCATAGGAACATGGACAAGAGGCCAAGGAAGAAGCCTCGTTTAACATGGGATAtgcctcctcctcctccacctcTTCCTCCACCCaagGTTCTTCCTACAATGTATTGCACCCAGGAGGTTGATAATGGAGTAGTTCCAAATCATGCTTATCCATCCATGTTTTACAGGGGAATGCCTCGCAATGGATCGCCCCCCTGGAGGCCTGATGATAAAGACGGTCACTACGTTTTTGCTGTTGGTGAAAATTTAACACCTCGATACAAAATTCTCAGTAAAATGGGTGAAGGAACTTTTGGCCAAGTGTTGGAATGTTTtgacaatgaaaaaaaagaaatcgtGGCAATTAAAATTGTTCGCTCCATTAACAAGTATCGTGAGGCTGCAATGACTGAAATCGATGTCTTGCTGAGGCTAGCCAGACATGATGTTGATGGTGCACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAATAGCTATCGTTCTTTTCCTATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAATATTCTTCTTGTCTCATCAGAATTTATTAAAGTGCCAGACTATAAGTTTCTAGCGCGGACCACAAAAGATGGCTCCTATTTCAAGAATCTACCCAAGTCAAGTACCATTAAGCTCATTGATTTTGGGAGTACAACATTTGAACATCAGGATCACAATTATGTTGTGTCAACAAGACACTATCGTGCACCAGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGTGATCTTTGGAGTGTGGGCTGCATACTGGTTGAGCTTTGCTCTGGAGAGGCACTTTTCCAAACTCATGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTTCTAGGGCCACTACCTCCCCATATGGTGGTCAGGGCTGACCGTCGAgctgaaaagtattttaaacgAGGTACACGATTAAGTTGGCCTGATAGTTCAACTTCAAGGGAAAGCATGAGGGCAGTGTGGAAATTGCTGCGTTTGCCGAACCTTATAATGCAGCATGTTGATCATTCTGCTGGCGATTTGATTGACCTCTTGCAAGGCCTCCTAAGGTATGACCCTTCAGAACGGCTTAAAGCTAAGGAAGCATTGAGACACCCCTTCTTCTTCACGAGAGATACTAAAAGATATGGCTACCCTTTATGA 1314 0.411 METQRIVEFPHRNMDKRPRKKPRLTWDMPPPPPPLPPPKVLPTMYCTQEVDNGVVPNHAYPSMFYRGMPRNGSPPWRPDDKDGHYVFAVGENLTPRYKILSKMGEGTFGQVLECFDNEKKEIVAIKIVRSINKYREAAMTEIDVLLRLARHDVDGARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSSEFIKVPDYKFLARTTKDGSYFKNLPKSSTIKLIDFGSTTFEHQDHNYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPPHMVVRADRRAEKYFKRGTRLSWPDSSTSRESMRAVWKLLRLPNLIMQHVDHSAGDLIDLLQGLLRYDPSERLKAKEALRHPFFFTRDTKRYGYPL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1102 437 ProSiteProfiles Protein kinase domain profile. 97 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1102 437 Gene3D Phosphorylase Kinase; domain 1 84 177 - -
Ssu4g1102 437 SMART serkin_6 97 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1102 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Ssu4g1102 437 CDD PKc_CLK 84 425 - -
Ssu4g1102 437 MobiDBLite consensus disorder prediction 1 33 - -
Ssu4g1102 437 PANTHER BNAA07G37640D PROTEIN 1 429 - -
Ssu4g1102 437 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 1 429 - -
Ssu4g1102 437 Pfam Protein kinase domain 97 425 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1102 437 Gene3D Transferase(Phosphotransferase) domain 1 151 425 - -
Ssu4g1102 437 SUPERFAMILY Protein kinase-like (PK-like) 84 428 IPR011009 -
Ssu4g1102 437 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1102 Ssu-Chr4 17529726 17534366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1102 97 425 Core Cell Cycle Gene Families AT1G76540 26.901 4.16e-30 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Ssu4g1102 Pkinase 7.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1102 K08287 - gmx:100808061 852.432