Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1098 ATGCAGAGACCTAAAGGAAGCAAGCAGGTTCATAGACATAGTAAACTTCAGAGTTTTCCTTCTGATTCTGGTGCTGGCGGCGATGGAGTTGCAGATGAAGATTCGTTGGGGTGGAGATCTTCAAAACAACCGTTTGGAACTCCCATGAAGAAGTTATTAGCTGAAGAACTGTCCCGACAAACTGAACCCAAAAGAAGAGCTCCTGGTGTCATAGGCAGATTAATGGGTCTTGATGGGCTTCCGTTGCAGTTGCCTACTAACAAGCATTATAAGGGTGTATCagaaaacaatgtaaaaaagacAGCACAGGCGGGGAAAACTCAAAACAGTGGTACATTATATGGCAGTCGATCATCTAGGAGAAGCTCAAAGCATCAGCAAGAGTTTAAGGATGTGTTTGAGGTCTCAGAGATCCCAAAGGTAGAGAGGTTTAGGTATTCATCGCAAGGGTCTGTAGAGTTGAAGATCACGGATGCTGAAATGTCATTTGTTGAACAGAAGTTCATTGATGCCAAATGCCGTGCAACTTATCAGGATTTACAGTCTTCGCAGGATTCCCATGATGCACTTGAGATTCTAGACTCTAACAATGATCTTCTGCAAAAATACTTTAAGCGGCCAGATTCTTTGTTTAAAATGCATCTAGACGATCTGCAAGCTGCCCCTTCCCAAACACATTTTGGTCACATTGAAGGTATGAAATCATCACATATAGAGAACTATGAACGTGGTGGCTTCAGCCAGAAGTCTGATAGGGAGATGAAAGGGATGAATTACAACAGATCACACCAGAAACATCATGATGGTTATTCTTGTCATTTTGCCAGAAGGCATGCTATTCACAGTTCGCCAAAATCATCAAAGCTTCAGTTTAAGGGTAGAGAAGAACCCGATGCGGTCCCAACAAGGATTGTTGTCCTAAAACCTAACCTTGGAAAAGTGCAGAATGCTACCAAAATTGATTCATCACTTTGTTCTTCACATACTTTCCTGTCTGAGTGTGGAAAGCgtgctgaatttttagatatCAGATTTAGGGACACTGAACTGAATCAAAGGAAAAATTTGCCTGATAATGCCTGGCATTCAAGGCAAAATTCTTTGGAATCAAGAGAAATTGCAAAGGAAATCACGAGccaaatgaaaaatagtttGAATAATGGCTCTATGATATTTTCATCTTCTAAATTTAGGGGATATACTTGGGATGATAGCTCATGTAGTTTTTCTGGGAATGAATCTCCTGATGAGTCAGAGGAGACACCTGCAACTTTGGGAAAGTCATTTGACATAAATCATGCTATCAACCCGGCATCCTGTTTTAGTGAATCATCTGTGAGTAGAGAGGCAAAGAAGAGATTAACAGAGAGGTGGAAAATGTCACTCAAGTCTCAACAGGGCCATTCCAGCTCCAGGAGCGGCACACTGGCTGAAATGCTTGCTAGCCCTGACAAGGAAATGAAAACAGCTAATTTTGACAGCATTTCTTGTGGGGAAGGTTTACGTGATAAACTTACTAGCAAAGGTAAACCTGCTGGGTGGGTTGAACCATTGGGTATTAGCAGTAGGGATGGTTGGAAGGATGGATGTATTGGAAGTTTACCAAGGTCTAAGTCTCTTCCTGCTTCATCTATTGCCTTTGGAAGTCCCAGCACAATCTTGCACCATGAAGGACTTCGTGATGATCGATTTATGATGCCAAAGGAAGCCTGTAAACGGGAAAggaaaaaagtagtgaaatgTCTTGATCAGAGACAGTGTTTGAATACCAGAAGCTCAAAATCTGGTCACAAGAAGTCTTGCTGTTCTCATTCATCAAACGCAGAAGGCAATGAGTCTTCCCCAgacttaaatacaattcaaaataaagtgaaaaataatctTGAAGAGGATTTGCCCAAGCAAGAAGTGTTGGCCGCTGAATCATTAGCTGAGATCCTCAGAGATACAAGTGCAGTTACTGAAGATGTTGTGGATGTGGCAAATGATAATGCAGTTGGTTCATCTGAATCTTCTATTAAGGAGTTATCAGTTGGGTCTTCCAGTAGAAATTCTGTCCCCTTGCAACCACCTGTATCTGGACTTGAATCTTCATGCTGTAAAGATGTGGATCAACCCAGCCCAGTCTCAGTGCTAGAACCTTCTTTTACTGATGATCTGTCATCTTGTTCTGAATGTTTTGAAAGTCTCAGTGTTGACATACAAGGGCTTCGAATGCAACTCCAGTTGCTGAAGCTGGAATCTGTAGAATTTGTGGAAGGACCCATGCTAATTCAAAGTGATGAAGATGGTGGGGAAGCATCTGCTGGAATTTCAGAAGACAATGGATTACGTAAGAGTGGAGATAGCTGGGAGTCTTCCTACATGATTGATGTCTTGTCTGAATCTGGTATTGATAGAGCTCAGTCTGAGGCATTTTTGGAAGTTTGGCATTCTCCGGAATGCCCCGTTAGTCTTTCAGTGTTTGATGAACTTGAAAAGAGGTACTCTGATTGGACTACTTGTCTAAGGTCTGAAAGGAGATTGCTTTTTGATCGCATAAATTCGGGAATTATCAATATTTACGAGCAATTTATGAGTACACAGCCATGGGCAAGCCCTACTACAGCCTCAAATCTTTGttctaaattgattaaaaatggaCTCCAAGACTGTCTGTACATGATGCTGGGGAGCCAAGGAAAAGTAAAGTATACCGCACTGGGGAAGGTGTTGGTTAGCGAATTGCATTGGTTGAACTTAAGAGATGACATTGATGGAATAGGTAGGGAAGTTGAGAGCTTGTTGCTAGATGATCTAGTGGCAGAGATAGCCGTTATATAG 2823 0.4052 MQRPKGSKQVHRHSKLQSFPSDSGAGGDGVADEDSLGWRSSKQPFGTPMKKLLAEELSRQTEPKRRAPGVIGRLMGLDGLPLQLPTNKHYKGVSENNVKKTAQAGKTQNSGTLYGSRSSRRSSKHQQEFKDVFEVSEIPKVERFRYSSQGSVELKITDAEMSFVEQKFIDAKCRATYQDLQSSQDSHDALEILDSNNDLLQKYFKRPDSLFKMHLDDLQAAPSQTHFGHIEGMKSSHIENYERGGFSQKSDREMKGMNYNRSHQKHHDGYSCHFARRHAIHSSPKSSKLQFKGREEPDAVPTRIVVLKPNLGKVQNATKIDSSLCSSHTFLSECGKRAEFLDIRFRDTELNQRKNLPDNAWHSRQNSLESREIAKEITSQMKNSLNNGSMIFSSSKFRGYTWDDSSCSFSGNESPDESEETPATLGKSFDINHAINPASCFSESSVSREAKKRLTERWKMSLKSQQGHSSSRSGTLAEMLASPDKEMKTANFDSISCGEGLRDKLTSKGKPAGWVEPLGISSRDGWKDGCIGSLPRSKSLPASSIAFGSPSTILHHEGLRDDRFMMPKEACKRERKKVVKCLDQRQCLNTRSSKSGHKKSCCSHSSNAEGNESSPDLNTIQNKVKNNLEEDLPKQEVLAAESLAEILRDTSAVTEDVVDVANDNAVGSSESSIKELSVGSSSRNSVPLQPPVSGLESSCCKDVDQPSPVSVLEPSFTDDLSSCSECFESLSVDIQGLRMQLQLLKLESVEFVEGPMLIQSDEDGGEASAGISEDNGLRKSGDSWESSYMIDVLSESGIDRAQSEAFLEVWHSPECPVSLSVFDELEKRYSDWTTCLRSERRLLFDRINSGIINIYEQFMSTQPWASPTTASNLCSKLIKNGLQDCLYMMLGSQGKVKYTALGKVLVSELHWLNLRDDIDGIGREVESLLLDDLVAEIAVI 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1098 940 Pfam DUF761-associated sequence motif 62 81 IPR032795 -
Ssu4g1098 940 Pfam Protein of unknown function (DUF3741) 165 209 IPR022212 -
Ssu4g1098 940 MobiDBLite consensus disorder prediction 1 68 - -
Ssu4g1098 940 MobiDBLite consensus disorder prediction 591 619 - -
Ssu4g1098 940 MobiDBLite consensus disorder prediction 669 690 - -
Ssu4g1098 940 MobiDBLite consensus disorder prediction 96 128 - -
Ssu4g1098 940 Pfam Domain of unknown function (DUF4378) 786 936 IPR025486 -
Ssu4g1098 940 PANTHER AFADIN 14 938 - -
Ssu4g1098 940 MobiDBLite consensus disorder prediction 759 781 - -
Ssu4g1098 940 PANTHER AFADIN 14 938 - -
Ssu4g1098 940 MobiDBLite consensus disorder prediction 96 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1098 Ssu-Chr4 17455584 17460929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1098 44 939 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 36.945 1.04e-140 442
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1098 - - pvu:PHAVU_001G171300g 1431.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1098 4 17455584 17460929 Ssu7g2325 7 45670174 45675826 PCT