Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1096 ATGAATAGGCTGTGTTTTAACCCCAAAACGCCGTCGTTCGCGAAGGCCCGCAATTCTCCTTCTTCGCCACTATCCATAACCTCAAGCCCAACCCCTCCGAGGCTGAGCTTTTCCGACCGTAGCGGCTTCGACGAAGATAGCTGCATCGACGAAGCAGAGGCACTGATACTGAAATGGAACCAAGACACCTCCACGTACGCCAAAGTCACCTCCCTCTTCTACGAGGACAAAACCGAAGCCAAGCACTACATCAACTGCGTTAACGAGCTTCACAAGACCATGCATTCCTTGCTCTCCCAGAACCCTTCCTCCGAGAGACTCATCCTCGCTCACAACCTAATGCAGATCGCCATGAAGAGGCTCAAGAAAGAGTTCTACCAGATCCTATGCATGAACCGCGCACACCTCGACCCCGAATCCGTCTCCGCCAGATGCTCTCGCACCTCCGCCAACTCCAGCGCCTCCGATTTCGACGACGACTTCGCCGCGGAGGACGACGATATCCGCGCCGCCGGCGACTCTATCTCCGAAGTCGAGCAGGTCTCGTCCATCGCCATGGCGGATCTGAAATTAATCGCCGACTGCATGGTCTCTTCCGGTTACGCCAAAGAATGCGTCAGCGTTTACATCACCATCCGGAAATCCATCATCGACGAAGGAATCTACCGCCTCGGCGTGGAGAAACTGAGCTCCTCGCGCGCTAGCAAGATGGATTGGGAAGTGCTTGATTTGAAAATCAAGAGTTGGTTAGAGGCAGTGAGGATCTCAGTCAGAACGCTCGTCAACGGAGAGAGAATACTCTGCGACCACGTCTTCAGTTGCTCAGATTCCACCAGGGAATCATGCTTCGCGGAGATTTCAAGAGACGGTGCCTCTCTCCTTTTCGGATTCCCCGAACTCGTCGCGAAAACAAAGAAATCGTCGCCAGAGAAGCTGTTCCGCGTGCTCGATATGCACGCTGTGATTTCCGAGCTCTGGCCGGAGATCGAGTCCATCTTCTCCTCCGATCACACCTCCGGCGTTCGCTCTCAAGTCCTCGCTTCGCTTAAGCGACTCACCGAGTCCGCGCAAATCTTGCTCGCGGAGTTCGAATCCACGATCCAGAAAGACTCTTCCAAGTTGCCGGTGAACGGCGGCGGCGTGCACTCGCTCACGATTCGGACGATCAATTACCTCTCAGTCCTCGCCGATTACGTCAACGTGCTCGCTGACATATTCCCGAGCGCGGACTGGCTTCCGCCGCCGAAGTCGTCGTCGCTGCCGGAATCTTATTTATACAGTCCGGAGTCCGATTATTCGTCGTCGACGCCGGCGCTGACGGCGCGCGTGGCGTGGCTAATTCTCGTCCTCCTTTGCAAGCTCGACGGCAAAGCAAAGCACTGCAAGGACGTTTCGCTGTCTTACCTGTTTCTCGCGAACAATCTCTGGTACGTGGTCGCCAGAGTCCAAAGCTCGAACCTGCAGTACGTGCTCGGCGACGATTGGATCACGAAGCACGAAGCTAAAGCGAAACGCTTCGTTGCGAACTACGAGAAGGTGGCGTGGGGAGAAGTGGTTTCGTCGTTGCCGGAAAATCCGGTGCCGGAGGAAGCAAGGGCGGTGTTCGAGAACTTCAACCTCAAATTCGAGGAAGCGTATCGGAAGCAGAACTCGTTCGTCGTAGCTGACCGAGAACTGCGAGACGAAATAAAAGGTTCGATCGCGAGAAGTATAGTGCCGAGATACCGCGAGTGGTATAATGCGCTTCTTGCGACGGTGGGATCGGTGAGGGACCTGACGGTGACGGAGTATGTCACGTTTACGCCTGaagatattgaaaattacaTGGCTAATCTCTTCTTTTTCGGAAAACAATCAAGTGCTGTATCGTCGTCGTCGGTAACTTCGTCCCCTCGCCGGCGTTGGAGTTAA 1911 0.5447 MNRLCFNPKTPSFAKARNSPSSPLSITSSPTPPRLSFSDRSGFDEDSCIDEAEALILKWNQDTSTYAKVTSLFYEDKTEAKHYINCVNELHKTMHSLLSQNPSSERLILAHNLMQIAMKRLKKEFYQILCMNRAHLDPESVSARCSRTSANSSASDFDDDFAAEDDDIRAAGDSISEVEQVSSIAMADLKLIADCMVSSGYAKECVSVYITIRKSIIDEGIYRLGVEKLSSSRASKMDWEVLDLKIKSWLEAVRISVRTLVNGERILCDHVFSCSDSTRESCFAEISRDGASLLFGFPELVAKTKKSSPEKLFRVLDMHAVISELWPEIESIFSSDHTSGVRSQVLASLKRLTESAQILLAEFESTIQKDSSKLPVNGGGVHSLTIRTINYLSVLADYVNVLADIFPSADWLPPPKSSSLPESYLYSPESDYSSSTPALTARVAWLILVLLCKLDGKAKHCKDVSLSYLFLANNLWYVVARVQSSNLQYVLGDDWITKHEAKAKRFVANYEKVAWGEVVSSLPENPVPEEARAVFENFNLKFEEAYRKQNSFVVADRELRDEIKGSIARSIVPRYREWYNALLATVGSVRDLTVTEYVTFTPEDIENYMANLFFFGKQSSAVSSSSVTSSPRRRWS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1096 636 SUPERFAMILY Cullin repeat-like 49 613 IPR016159 -
Ssu4g1096 636 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 1 620 - -
Ssu4g1096 636 MobiDBLite consensus disorder prediction 1 42 - -
Ssu4g1096 636 MobiDBLite consensus disorder prediction 12 36 - -
Ssu4g1096 636 PANTHER EXOCYST COMPLEX PROTEIN EXO70 1 620 IPR004140 GO:0000145|GO:0006887
Ssu4g1096 636 Gene3D Exocyst complex component Exo70 63 621 - -
Ssu4g1096 636 Pfam Exo70 exocyst complex subunit 247 610 IPR046364 GO:0000145|GO:0005546|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1096 Ssu-Chr4 17409405 17411315 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1096 47 613 EXO70 exocyst subunit family AT3G09520 56.574 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1096 K07195 - gmx:100810548 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2329 7 45774796 45775512 Ssu4g1096 4 17409405 17411315 PCT