Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1087 ATGGGGAAAGGAGGCGAAGATTATGGGAAACGAGAGAACACGAGTTCCGAGGCTTCGGACCGTGAAATCTTCAAGGCGTGGGCGAAGGACGTGCGCGAGTGCGAGGAACACTTCAAGGTGAGCGTGAAAGTTGGTTTGAACCACGACGAGGTCGAGAATCGGCGCAAGATCTATGGATTGAACGAGTTGGAGAAGCACGAGGGGCCGTCGATATGGAGTCTGGTTCTGGAGCAGTTCAACGACACGTTGGTTCGGATTCTCCTCGCCGCCGCCATCATATCCTTCGTGCTCGCGTGGTACGACGGCGACGAAGGCGGCGAGATGGAGATAACGGCCTTCGTGGAGCCTCTCGTGATATTCCTGATATTAATCGTGAACGCAATTGTCGGCGTGTGGCAAGAGAGCAATGCGGAGAAGGCGCTTGATGCGTTGAAAGAGATTCAGTCGGAGCACGCGGTGGTGATTCGAGAGGGCGCGAAAATCCCTAATTTGCCGGCGAAGGATCTCGTACCCGGCGACATCGTGGAGCTTAAGGTTGGGGATAAGGTGCCTGCGGATATGCGCGTTGTGGAATTGATCAGTTCCACTCTGCGGTTGGAGCAGGGTTCTTTGACCGGAGAGAGTGAAGCGGTGAATAAGACCAACAAGCGTGTGGATGAGGATGCTGATATTCAGGACAAGAGGTGTATGGTTTTCGCGGGGACCACTGTTGTTAACGGGAATTGCGTTTGCTTGGTCACTCAGACCGGCATGGACACCGAAATTGGGAAGGTGCATACGGATATCCACGTGGCATCGCAGAGTGAGGAAGATACGCCGTTGAAGAAGAAGCTGAATGAGTTTGGAGAGAAGCTGACCATGATAATTGGACTGATTTGTGTTTTGGTTTGGCTCATCAATGTTAAGTACTTCCTTTCCTGGGAGTATGTGGATGGATGGCCCAGGAACTTCAAGTTTTCGTTTGAGAAGTGTACTTATTACTTTGAGATTGCCGTGGCGCTGGCTGTGGCTGCTATTCCGGAAGGTTTGCCGGCAGTCATCACGACTTGCCTGGCTCTGGGTACTCGCAAGATGGCCCAGAAGAATGCCCTGGTTCGGAAGCTACAGAGCGTGGAGACTCTGGGTTGCACCACTGTGATTTGTTCGGATAAAACTGGTACTTTGACTACAAACCAAATGGCTGTGGCAAAGTTAGTTGCTATTGGACATAATGTGGACACACTCAGAGCCTTCAAGGTGGAAGGAACTACGTACAATCCATCTGATGGCCAAATAGAGAACTGGCCAACTGGTGGATTGGATGCTAATTTTCAGATGATAGCAAAAATAGCTGCGGTCTGTAATGATGCTGGAGTTGCGCAGTCAGAGCATAAATTTGTTGCCCATGGAATGCCTACTGAAGCAGCTTTAAAGGTTTTGGTAGAGAAGATGGGCATTCCTGAAGGATCCAAGGATGTGCGATTGGCTAGCACAGCAAAAACACATACCTTGCTGCGTTGTTGTGAATGGTGGAATGAGCATGACCGACGGATTGCTACTCTTGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATTGTGGACTCTGGTCTAGGCAAAAGGTCGCTTCTAGTTAAGGGTGCTGTGGAAAATGTGTTGGACAGAAGCTCTAAAATTCAGTTGCGCGATGGTTCTATTGTGAAACTAGATGATAATGCTAGGAACCTCGTATTGCAAGCTCTTCATGAAATGTCAACTAGTGCATTGCGCTGTTTGGGATTTGCATACAAGGATGAGCTCCCCACATTTGAAAACTACAATGGTAATGACGATCATCCAGCTCACCAGCTTTTGCTTAATCCTTCCAACTATTCATCAGTTGAAAGTGAACTTATTTTTGTTGGCTTGGTTGGTTTGAGGGATCCTCCTAGGGAGGAGGTATACCAAGCAATTGAAGACTGCAGAGAAGCTGGAATTCGTGTTATGGTTATAACAGGGGACAACAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTTCACCTGATGAAGACATTAGTTCTACAAGCATAACTGGTAAAGATTTTATGGAACTGCGTGATAAAAAGGCCTATCTGAGACAGAGTGGCGGGCTTTTGTTTTCAAGGGCTGAACCTAGGCACAAGCAAGAAATTGTGAGGCTGCTCAAAGAGGAAGGGGAGGTGGTGGCCATGACTGGGGATGGTGTTAATGATGCACCTGCCTTGAAGCTTGCAGACATTGGTGTTGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTGTTGGctgatgataattttagttcaaTTGTTGCTGCTGTTGGTGAGGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTATATGATCTCCTCCAATATTGGCGAGGTTGCTTGTATATTTTTAACAGCTGCACTAGGTATTCCTGAAGGATTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACAGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCACAGCAATGactcattaattaatttgtggATTTTATTCCGCTATTTGGTTATTGGGATTTATGTTGGATTAGCTACAGTTGGTGTCTTCATCATATGGTATACACATGGTTCCTTCTTGGGTATTGACCTTAGTGGGGATGGACATTCTCTTGTCACTTACTCCCAACTTGCCAACTGGGGTCAATGCTCCTCATGGAAGAACTTTACTGCTTCTCCATTCACTGCTGGTGCTAGAACTATCTCTTTTGACAACCCCTGTGATTACTTTCAGACTGGTAAAGTGAAGGCTATGACGCTGTCCCTTTCTGTGTTGGTAGCCATTGAAATGTTCAACTCTCTCAATGCCCTATCCGAAGATGGAAGCCTTTTGACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCAGTATCATTTGGTCTGCACTTTTTGATCTTATACGTGCCATTCTTAGCACAAGTATTTGGTATCGTGCCCCTGAGCTTCAACGAGTGGCTTTTGGTTTTGGTGGTTGCATTTCCCGTCATTCTAATTGACGAGATTCTGAAGTTTGTGGGGAGGTGTACAAGTGGGTCTCGAGCCTCAAGTGCAAGAAGGTCAAAGCAAAAATCAGAGTAG 3195 0.4664 MGKGGEDYGKRENTSSEASDREIFKAWAKDVRECEEHFKVSVKVGLNHDEVENRRKIYGLNELEKHEGPSIWSLVLEQFNDTLVRILLAAAIISFVLAWYDGDEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALDALKEIQSEHAVVIREGAKIPNLPAKDLVPGDIVELKVGDKVPADMRVVELISSTLRLEQGSLTGESEAVNKTNKRVDEDADIQDKRCMVFAGTTVVNGNCVCLVTQTGMDTEIGKVHTDIHVASQSEEDTPLKKKLNEFGEKLTMIIGLICVLVWLINVKYFLSWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLQSVETLGCTTVICSDKTGTLTTNQMAVAKLVAIGHNVDTLRAFKVEGTTYNPSDGQIENWPTGGLDANFQMIAKIAAVCNDAGVAQSEHKFVAHGMPTEAALKVLVEKMGIPEGSKDVRLASTAKTHTLLRCCEWWNEHDRRIATLEFDRDRKSMGVIVDSGLGKRSLLVKGAVENVLDRSSKIQLRDGSIVKLDDNARNLVLQALHEMSTSALRCLGFAYKDELPTFENYNGNDDHPAHQLLLNPSNYSSVESELIFVGLVGLRDPPREEVYQAIEDCREAGIRVMVITGDNKNTAEAICREIGVFSPDEDISSTSITGKDFMELRDKKAYLRQSGGLLFSRAEPRHKQEIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSSIVAAVGEGRSIYNNMKAFIRYMISSNIGEVACIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRHSNDSLINLWILFRYLVIGIYVGLATVGVFIIWYTHGSFLGIDLSGDGHSLVTYSQLANWGQCSSWKNFTASPFTAGARTISFDNPCDYFQTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLAQVFGIVPLSFNEWLLVLVVAFPVILIDEILKFVGRCTSGSRASSARRSKQKSE 1064
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1087 1064 Gene3D - 378 779 IPR023214 -
Ssu4g1087 1064 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 632 IPR023299 GO:0000166
Ssu4g1087 1064 Gene3D - 45 265 - -
Ssu4g1087 1064 SUPERFAMILY HAD-like 379 838 IPR036412 -
Ssu4g1087 1064 Pfam E1-E2 ATPase 147 361 - -
Ssu4g1087 1064 PANTHER RETICULUM [ER]-TYPE CALCIUM ATPASE, PUTATIVE-RELATED 4 1061 - -
Ssu4g1087 1064 SUPERFAMILY Calcium ATPase, transduction domain A 150 259 IPR008250 -
Ssu4g1087 1064 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Ssu4g1087 1064 Pfam haloacid dehalogenase-like hydrolase 378 748 - -
Ssu4g1087 1064 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Ssu4g1087 1064 Gene3D - 77 1046 - -
Ssu4g1087 1064 PRINTS P-type cation-transporting ATPase superfamily signature 758 770 - -
Ssu4g1087 1064 PRINTS P-type cation-transporting ATPase superfamily signature 734 753 - -
Ssu4g1087 1064 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Ssu4g1087 1064 PRINTS P-type cation-transporting ATPase superfamily signature 628 639 - -
Ssu4g1087 1064 PRINTS P-type cation-transporting ATPase superfamily signature 650 660 - -
Ssu4g1087 1064 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Ssu4g1087 1064 Pfam Cation transporting ATPase, C-terminus 819 1044 IPR006068 -
Ssu4g1087 1064 SFLD p-type atpase 362 786 IPR044492 -
Ssu4g1087 1064 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Ssu4g1087 1064 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 708 815 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1087 1064 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1087 1064 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Ssu4g1087 1064 PANTHER CALCIUM-TRANSPORTING ATPASE 4 1061 - -
Ssu4g1087 1064 Gene3D - 391 635 IPR023299 GO:0000166
Ssu4g1087 1064 SFLD C1.7: P-type atpase like 362 786 - -
Ssu4g1087 1064 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1047 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1087 Ssu-Chr4 17253831 17259841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1087 1 1064 Primary Pumps ATPases(2) AT1G07670 79.831 0.0 1742
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1087 K01537 - gmx:100788807 1998.02