Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1086 ATGTCTCGCCTCGACGACAGGCTTCCTTTCTTCCACCAATCCATGGAGCTAGTCCAACTCCCATACCCACCCGCAACCCGAAGCCGATCTCGAACCCTCGGCGACCTCCTCAAACGCGTGGAAGACGCTCAAAACGACACTCCTCCTACGCCACCCCGCCACCACGTTCTCGAcctctcctcttcctcctcctccacccCACTTAACTCTCACCCATTTGTCCTCTCCTTCGCCAACTTATCCTACAGCGTCAGGCTCCGCCGCAAGTTCTCCTTCTTCCCCGCCACCACCGTTTCCCCGCCCGACGACCAGACCAAGCCCAACGGCACCAAGATCCTCCTCAACGACATCTCCGGCGAGGCCCGCGACGGCGAGATCATGGCCGTCCTCGGCGCCAGCGGCTCCGGCAAGTCCACCCTCATCGACGCCCTCGCCGACCGCATCTCCAAGGAAAGCCTCAAGGGCACCGTCACCCTGAACGGCGACGTTCTGGACTCCAGTCTCCTCAAGGTCATCTCCGCTTACGTCATGCAGGACGACCTCCTCTTCCCCATGCTCACCGTCGAGGAAACCCTCATGTTCGCCGCCGAGTTCAGACTCCCTCGCTCCCTCTCCAAATCCAAGAAAAAAGCCCGCGTCCAGGCCCTCGTCGACCAGCTCGGCCTCCGCTCCGCCGCCAGAACCGTCATCGGCGACGAGGGCCACCGCGGCGTCTCCGGCGGAGAGCGCCGCCGCGTCTCCATCGGAACCGACATCATCCACGACCCCATCGTGCTCTTCCTCGACGAGCCAACCTCCGGGCTCGACTCCACCAGCGCCTTCATGGTCGTCAAGGTCCTCCAGCGAATCGCTCAGAGCGGAAGCATCGTCATCATGTCCATTCACCAACCCAGCTACAGAATCTTGAGCTTGCTGGACCGCTTGCTCTTCCTCTCCCACGGTAACACCGTCTTCAGCGGCTCTCCGGTCACCCTCCCCCTCTTCTTCTCCGAGTTCGGCCACCCCATACCGGAGAACGAGAACCGCACCGAATTCGCGCTTGACCTAATCCGCGAGCTCGAAGAAACACCCGGCGGGACCAAGAGTTTAGTGGACTTCAACAGATCCTGGCACCTCAAGAACTCAGCCCAGGCCCAGAACGGGCCCAAACCCAAAGTGTCTCTCAAAGACGCCATCAGCACTAGCATTTCCCGTGGGAAACTGGTGTCAGGCACTAACCGTAACGGCAACGACTCGACGGCGGCGTCAGTTTCAGTTCCTTCCTTCGCGAATCCGTCCTGGATGGAAATGTTGGTGATAGGAAGACGGTCTCTAACTAACTCGCGGAGGATGCCCGAGTTATTCGGAATTCGTTTGGGTGCGGTTTTGGTGACGGGGGCAATCTTGGCAACGATCTTTTGGCACCTGGATGATTCGCCGAAAGGGGTTCAAGAGCGCTTGGGGTTCTTCGCGTTCGCCATGTCCACCACGTTTTACACGTGCGCCGAAGCCATCCCGGTGTTCCTCCAAGAGCGTTACATCTTCATGAGGGAAACCGCTCACAACGCTTACCGTCGCTCCTCCTACGTCCTCGCGCACGCAATCATTTCCCTCCCTTCGCTGCTCTTCCTCTCCCTCGCGTTCGCGGCGACCACGTTCTGGGCCGTGGGCCTCGGCGGGGGGGACTTCGggctttcttttttatttcctggCCATCGTGGCCTCGTTCTGGGCCGGGAACTCGTTCGTGACGTTCCTCTCGGGGGTGGTGTCGCACGTGATGATTGGGTTCACCGTCGTGGTTGCCATTTTGGCGTACTTTCTTCTCTTCAGCGGGTTCTTCATCAGCAGGGACAGGATCCCGCCGTACTGGATATGGTTCCACTACCTGTCGCTGGTGAAGTACCCGTACGAGGGAGTGCTGCAGAACGAGTTCGACGTGAAGTCTCCGAAGTGCTTCGTGAGGGGGATTCAGATGTTCGACAACACGCCGCTGGGGGCGGTGCCCGAGACGCTTAA 1998 0.5866 MSRLDDRLPFFHQSMELVQLPYPPATRSRSRTLGDLLKRVEDAQNDTPPTPPRHHVLDLSSSSSSTPLNSHPFVLSFANLSYSVRLRRKFSFFPATTVSPPDDQTKPNGTKILLNDISGEARDGEIMAVLGASGSGKSTLIDALADRISKESLKGTVTLNGDVLDSSLLKVISAYVMQDDLLFPMLTVEETLMFAAEFRLPRSLSKSKKKARVQALVDQLGLRSAARTVIGDEGHRGVSGGERRRVSIGTDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSIHQPSYRILSLLDRLLFLSHGNTVFSGSPVTLPLFFSEFGHPIPENENRTEFALDLIRELEETPGGTKSLVDFNRSWHLKNSAQAQNGPKPKVSLKDAISTSISRGKLVSGTNRNGNDSTAASVSVPSFANPSWMEMLVIGRRSLTNSRRMPELFGIRLGAVLVTGAILATIFWHLDDSPKGVQERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAHNAYRRSSYVLAHAIISLPSLLFLSLAFAATTFWAVGLGGGDFGLSFLFPGHRGLVLGRELVRDVPLGGGVARDDWVHRRGCHFGVLSSLQRVLHQQGQDPAVLDMVPLPVAGEVPVRGSAAERVRREVSEVLREGDSDVRQHAAGGGARDA 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1086 665 MobiDBLite consensus disorder prediction 646 665 - -
Ssu4g1086 665 Pfam ABC-2 type transporter 295 385 IPR043926 GO:0140359
Ssu4g1086 665 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 28 560 - -
Ssu4g1086 665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 324 IPR027417 -
Ssu4g1086 665 Gene3D - 102 326 IPR027417 -
Ssu4g1086 665 Pfam ABC-2 type transporter 431 556 IPR013525 GO:0016020|GO:0140359
Ssu4g1086 665 ProSitePatterns ABC transporters family signature. 238 252 IPR017871 GO:0005524
Ssu4g1086 665 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 99 338 IPR003439 GO:0005524
Ssu4g1086 665 PANTHER ABC TRANSPORTER G FAMILY MEMBER 16 28 560 - -
Ssu4g1086 665 MobiDBLite consensus disorder prediction 42 67 - -
Ssu4g1086 665 Pfam ABC transporter 114 266 IPR003439 GO:0005524
Ssu4g1086 665 SMART AAA_5 123 338 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1086 Ssu-Chr4 17231753 17233750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1086 113 298 Calmodulin-binding Proteins AT2G36910 29.630 4.87e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1086 K05681 - gmx:100781319 863.218