Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1082 ATGTCCATGTCGGTTCCACATCCGCGCAgttctcttctccttcttttctcCTCCATATTCTTCACCTATTTCCCAGGATTGGTCATATCTGCGGACGTGACGCTAAGCTCGATTGAGATTTTCACAACCCACGAGTGGCTAAGAGCCACTCCAACTGTCTATTTTCTATGCAAAGGGGACAACAAAACCGATTTGCCTGATGTGAAAAAACCGCATGTCTTCTATTCTTTTAAGGCTGAAGAGTCTTGGCAGCCTTTGACTAATTTCTCGGGTAAAAAGTGCAAGCGATGTGGATTCTATGAGGAAGACAGAATTCTTTCAGATGATGTGTTTGATGAGTGGGAATTGTGTCCTTCTGATTTTACTGCCCCTGATGGCAGATACATCCACTTCAAGGAAAAAGAATTCAATGCTAGTTTTCTGTGCCCAGAGTGCTTATCTTTTTCTGTTGTTTCTATCTCTGCACCTGCTGCTGagaatcataataaaaaaggaatgaatGTAGCAGTTGTCATTTTGCTAAGTGTTTTGGTCTCAACTATATTGATTCTGGGAATGGTGGCTGCAAAGAAGTATTGGCAAAAGAAGAGGAGGGAGCAGGATCAGGCTCGGTTTTTGAAGCTATTTGAAGAAGGAGATGACATTGAGGATGAGCTTGGCCTTGGCACTATAATATGA 678 0.4027 MSMSVPHPRSSLLLLFSSIFFTYFPGLVISADVTLSSIEIFTTHEWLRATPTVYFLCKGDNKTDLPDVKKPHVFYSFKAEESWQPLTNFSGKKCKRCGFYEEDRILSDDVFDEWELCPSDFTAPDGRYIHFKEKEFNASFLCPECLSFSVVSISAPAAENHNKKGMNVAVVILLSVLVSTILILGMVAAKKYWQKKRREQDQARFLKLFEEGDDIEDELGLGTII 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1082 225 PANTHER PROTEIN, PUTATIVE-RELATED 5 225 - -
Ssu4g1082 225 PANTHER EXPRESSED PROTEIN 5 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1082 Ssu-Chr4 17180438 17187923 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1082 - - gmx:100790395 373.629
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1082 4 17180438 17187923 Ssu7g2461 7 47990354 47992954 PCT
Ssu7g2337 7 45949521 45952683 Ssu4g1082 4 17180438 17187923 PCT