Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1080 ATGAAGGAAATTGATGCCAGGATGAAGAAATTCTCTAGACTCATGGGCGTTTCGTTTAAATTCAACATTGTTCACCACGCAGGTCAATTCTTGGAGTTCAATTTCAACGAGTTAGGTATCAAAGAAGACAAGAGGCTGCAACTGAGGAGCGTGATGAtggtggaggaggaggttgaTTTGGATGTGGGATTGGAGGGGTTTGAGTTTGTGAAAGGGTTCCAAGAGTGTTTAAGGTGGTTTAGGGTTTACTTTGAGGGAGCCGAGGAGGACAGTGGTGGACTTGGTGGTGTGTTCGCCGACAGAGTTGGTGGAGCGGCGAGAAACGACAGCTCGATGGGTGTAGTAGATGTATGGAGGGGGGTTCAATACAGTGATCATGTGAGGGCGCTGTTGAGGAGGCATAAGGAGGGGTGGGCAATGTCATAG 426 0.4601 MKEIDARMKKFSRLMGVSFKFNIVHHAGQFLEFNFNELGIKEDKRLQLRSVMMVEEEVDLDVGLEGFEFVKGFQECLRWFRVYFEGAEEDSGGLGGVFADRVGGAARNDSSMGVVDVWRGVQYSDHVRALLRRHKEGWAMS 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1080 141 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 46 IPR005202 -
Ssu4g1080 141 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 44 91 IPR005202 -
Ssu4g1080 141 PANTHER PROTEIN SHORT-ROOT 1 46 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Ssu4g1080 141 PANTHER PROTEIN SHORT-ROOT 44 91 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1080 Ssu-Chr4 17175043 17175613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1080 1 140 GRAS Transcription Factor Family AT4G37650 39.394 2.11e-28 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1080 - - ccaj:109811143 134.806