Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1076 ATGAAAGCTGCTTGGTTTCTCATCCCAAGATACCCTTCTCAGTTAGTTTGGCCCATACCAGggATTGCCAAAAAAACTATGGTTAGATCCTGCTGGAAACCAACTGTGGTGGGTGATGATGGAGATGTGAATGGGCGAGTTGAGGGGCTGCTATGGTACAAGGATTTGGGGAACCATCTTTATGGGGAATTCTCTATGGCTGTAATTCAGGCTAATAGTTCATTGGAGGATCGTAGCCAACTTGAATCTGGACCCTTGACTTCTGACTATTTGGGTCCTCAAGGAACCTTTATAGGTGTATATGATGGTCATGGTGGCACCGCGGCCTCGCAGTTCGTCAGTGATAATCTTTTCTGCAATTTCAAGAGTTTCGCAGCTGAGCATCAAGGCATTTCAGAGAATGTTATACGAAGGGCCTTTTCCGCTACAGAAGAGGGTTTTCTGTCTGTTGTGAAGAAACAGTGGCTAAGCAAGCCACAGATCGCATCCACGGGTACATGTTGTTTGGCAGGGATAATTTGCAATGGCATGCTATATATTGCAAATGCAGGAGACTCAAGGGCGGTGTTGGGGAGAGTAGAGAGGGCAACAAGGGAAATATCAGCTATCCAATTGTCTGCAGAACATAACGTTAACATCCAAACAGAGAGAGATGAACTTCGGTCGAAGCACCCCTATGATCCGCAAATCGTGGTTATGAAACACAAAGTTTGGCGTGTGAAAGGCCTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGACGAATTTAACAGGGAGCCTCTACCGTATAAGTTTAGACTGCCTGAACCCTTCTTCAAGCCGATTCTTAGTTATGAACCATCAGTATCAATGCATAAACTCCATCCTGACGATCAATTTCTCATCTTTGCTTCTGATGGTTTATGGGAGCAACTTAGCAACCAAGAGGTTGTCAATATAGTCAGCAATAACCCACGAAATGGAATTGCTAGGCGGCTTGTGAAAGCTGCACTTCGAGAAGCAGCTaggaagagagaaatgagagtCTCAGACCTCCAAAAGATTGAACAAGGGGTTAGGAGACACTTCCACGATGATATTACGGTTATTGTTGTATTTCTAAATCCCAAACTCATTGATAATAGCTCTCTCTTGGCTTCTCCTCTTTCAATCAGAGGAGGTGGGTCTGTCAATTTTTAG 1191 0.4341 MKAAWFLIPRYPSQLVWPIPGIAKKTMVRSCWKPTVVGDDGDVNGRVEGLLWYKDLGNHLYGEFSMAVIQANSSLEDRSQLESGPLTSDYLGPQGTFIGVYDGHGGTAASQFVSDNLFCNFKSFAAEHQGISENVIRRAFSATEEGFLSVVKKQWLSKPQIASTGTCCLAGIICNGMLYIANAGDSRAVLGRVERATREISAIQLSAEHNVNIQTERDELRSKHPYDPQIVVMKHKVWRVKGLIQVSRSIGDAYLKKDEFNREPLPYKFRLPEPFFKPILSYEPSVSMHKLHPDDQFLIFASDGLWEQLSNQEVVNIVSNNPRNGIARRLVKAALREAARKREMRVSDLQKIEQGVRRHFHDDITVIVVFLNPKLIDNSSLLASPLSIRGGGSVNF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1076 396 Gene3D - 54 380 IPR036457 -
Ssu4g1076 396 PANTHER ALPHABET, ISOFORM E-RELATED 28 394 - -
Ssu4g1076 396 ProSitePatterns PPM-type phosphatase domain signature. 97 105 IPR000222 GO:0043169
Ssu4g1076 396 PANTHER SERINE/THREONINE PHOSPHATASE FAMILY, 2C DOMAIN PROTEIN 28 394 - -
Ssu4g1076 396 CDD PP2Cc 61 371 IPR001932 -
Ssu4g1076 396 SMART PP2C_4 57 369 IPR001932 -
Ssu4g1076 396 Pfam Protein phosphatase 2C 95 340 IPR001932 -
Ssu4g1076 396 SUPERFAMILY PP2C-like 72 372 IPR036457 -
Ssu4g1076 396 ProSiteProfiles PPM-type phosphatase domain profile. 60 371 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1076 Ssu-Chr4 17123575 17125740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1076 27 394 PP2C-type Phosphatase Gene Family AT3G12620 66.577 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1076 K01102 - gmx:100815902 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1076 4 17123575 17125740 Ssu4g1076 4 17123575 17125740 ECH
Ssu4g1076 4 17123575 17125740 Ssu7g2343 7 46007518 46009277 PCT