Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1069 ATGGGTTGGATTCCCTGTTCTGGATATTCTGGCACTAAGAACAAGATTGAGAAGATGGAAGTTCAGGACAGTCTCGTTAGTCAGATCAAAGCCACCCCAGGAAAGTTGAAGAGGAATTCATCCACAAATTCTAAAGATACATCTAAAAATGGGAACCCTGATCACATCGCTGCACAGACATTCTCATTCCGTGAGTTGGCAACTGCAACTAGAAATTTTAGAGCTGAATCTCTTTTGGGAGAGGGAGGCTTTGGTAGAGTATACAAAGGGCGTCTGGATAGTATTAATCAGGTTGTCGCAATTAAGCAGCTTGACCGAAATGGACTGCAAGGGAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCATCCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTGCATGATATTCCTCCTGGCAAGCAACAACTCGACTGGAGCATGCGAATGAAAATAGCGGCTGGGGCAGCAAAGGGATTGGAATATCTACATGACAAAGCTAATCCTCCTGTCATCTACCGCGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCACCCAAAGTTATCTGATTTTGGTTTGGCCAAACTTGGCCCGGTTGGGGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACTGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCAATTGACAATTCAAAATCTGCAGGAGAACAGAATCTTGTTGCATGGGCTAAACCCTTGTTTAAGGATCGAAGAAAGTTTTCACAAATGGCTGATCCAATGCTCAAGGTCAATATCCTCCAAGAGGGCTATACCAGGCCCTTGCTGTTGCAGCAATGTGTGTGCAGGAGCAGGCTAACATGCGTCCAGTTATAG 1020 0.4324 MGWIPCSGYSGTKNKIEKMEVQDSLVSQIKATPGKLKRNSSTNSKDTSKNGNPDHIAAQTFSFRELATATRNFRAESLLGEGGFGRVYKGRLDSINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIPPGKQQLDWSMRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWAKPLFKDRRKFSQMADPMLKVNILQEGYTRPLLLQQCVCRSRLTCVQL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1069 339 ProSiteProfiles Protein kinase domain profile. 73 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1069 339 SUPERFAMILY Protein kinase-like (PK-like) 59 307 IPR011009 -
Ssu4g1069 339 Gene3D Transferase(Phosphotransferase) domain 1 150 335 - -
Ssu4g1069 339 Pfam Protein tyrosine and serine/threonine kinase 76 282 IPR001245 GO:0004672|GO:0006468
Ssu4g1069 339 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Ssu4g1069 339 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL7-RELATED 1 321 - -
Ssu4g1069 339 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
Ssu4g1069 339 PANTHER OS07G0668900 PROTEIN 1 321 - -
Ssu4g1069 339 SMART serkin_6 73 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu4g1069 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Ssu4g1069 339 CDD STKc_IRAK 79 310 - -
Ssu4g1069 339 MobiDBLite consensus disorder prediction 30 55 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1069 Ssu-Chr4 17046925 17049853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1069 33 338 Glycoside Hydrolase AT3G07070 65.359 1.17e-141 405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Ssu4g1069 PK_Tyr_Ser-Thr 1.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1069 - - gmx:100793549 603.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0010 7 115463 120430 Ssu4g1069 4 17046925 17049853 ECH
Ssu4g1069 4 17046925 17049853 Ssu4g1069 4 17046925 17049853 ECH
Ssu4g1069 4 17046925 17049853 Ssu7g2347 7 46094717 46098344 PCT