LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu4g1068	ATGGCAGTTACATTATACGACCTTAGCTCTGCCTCTGGGTTGAAGAAGCTCGATGAGTACCTTCTCCCACGCAGTTATATCACTGGCTACCAAGCTTCAAAGGACGATCTTGCTGTATATGCAGCTTTGCCAACTGCTCCGTCAGATGTGTATGTGAATGTGTCCAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATCTCTGGTGTTTCTGGCTGTTGCAACTCCCCTGCTGCTGACACGAAGGCTGTTGTGGCtgaggatgatgatgatgatgatgtggaTTTGTTTGGTGAAGAGacagaagaagagaagaaggcaGCGGAGGAACGGGCAGCTGCAGTGAAGGCATCtgcaaaaaagaaagagtCTGGGAAATCATCTGTTCTGTTGGATGTGAAACCATGGGACGATGAAACTGACATGAAGAAGCTTGAAGAATCAGTGAGATCTGTTCAGATGGACGGATTGCTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAATTGCAAATTATGCTTACTATTGTGGATGACCTTGTTTCTGTCGACAATCTTATTGAGGAACATCTCACAGTTGAGCCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAACAAAATATgctactttaaaagtttaatCCCGCATGATATCATTCTCCTAGTGGCATCTTGTCATTAA	705	0.4028	MAVTLYDLSSASGLKKLDEYLLPRSYITGYQASKDDLAVYAALPTAPSDVYVNVSRWYKHIDALLRISGVSGCCNSPAADTKAVVAEDDDDDDVDLFGEETEEEKKAAEERAAAVKASAKKKESGKSSVLLDVKPWDDETDMKKLEESVRSVQMDGLLWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNLIEEHLTVEPINEYVQSCDIVAFNKICYFKSLIPHDIILLVASCH	234

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu4g1068	234	CDD	EF1B	124	215	IPR014038	GO:0003746\|GO:0006414
	Ssu4g1068	234	SUPERFAMILY	GST C-terminal domain-like	11	68	IPR036282	-
	Ssu4g1068	234	SUPERFAMILY	eEF-1beta-like	123	215	IPR036219	-
	Ssu4g1068	234	Pfam	EF-1 guanine nucleotide exchange domain	128	215	IPR014038	GO:0003746\|GO:0006414
	Ssu4g1068	234	PANTHER	EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER	1	218	-	-
	Ssu4g1068	234	Coils	Coil	98	118	-	-
	Ssu4g1068	234	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 2.	204	215	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Ssu4g1068	234	SMART	EF1_GNE_2	126	215	IPR014038	GO:0003746\|GO:0006414
	Ssu4g1068	234	Gene3D	-	3	80	-	-
	Ssu4g1068	234	ProSitePatterns	Elongation factor 1 beta/beta'/delta chain signature 1.	90	98	IPR001326	GO:0003746\|GO:0005853\|GO:0006414
	Ssu4g1068	234	PANTHER	ELONGATION FACTOR 1-DELTA 1-RELATED	1	218	-	-
	Ssu4g1068	234	Gene3D	-	119	215	IPR014717	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu4g1068	Ssu-Chr4	17041986	17043998	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu4g1068	7	215	Eukaryotic Initiation Factors Gene Family	AT2G18110	73.451	2.83e-98	284

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu4g1068	K03232		-	gmx:100499878	325.479