Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1067 ATGGATATTAAGGAAGCAGAAAGGGTGGTCATTGCCAAACCAGTTGCTTCAAGGCCTACTTGTTCTACTTTCAGATCTTTCTCAGAGCTCCTAGCAGGTGCAATCAATGCTTCTCCTGCTATTGCATCTTCTCATACTACGGTTTCCGCCATTAGACCCAAGACAGTGAGGTTCAAGCCAGCAGTGAATCACCCCCCTGCTGGGTTTGTTTCTTCTCAGGCTGATACTTTTGGAGCTGCACTTAGTAACTCTTCTGACAAGAGTCCTAAACTTGACACCAAGCAGTCCCTCATATACAAGCCAACGGCAAAATTCGTGTCAAAGACAACTGTGTCTCTTTTGGCAAATATGGGAAATTGCAGTACTAGTCAGCAACAAACACGGCAATCAATGGAGGCCAATTTTCAACATTCCATCCATgaaaaatttagaaccaacatGAGCTCAAATCTTGATCAGAGTATTACCCCGCATGCGGAAATAAATCAGACCAGTGAACCTAGTAAGATGGTGCAGCAGAACATAGAGGAGGACCAAAAAGCTTTGACATCCTCAGTCAATTGTGATCGACCATCTTATGATGGCTATAATTGGAGGAAATATGGTCAGAAGCAAGTGAAAGGGAGCGAGTACCCGCGAAGTTATTACAAGTGCACACATCCCAATTGTCCAGTGAAAAAGAAGGTTGAAAGATCATTTGATGGGCAGATTGCAGAAATTGTTTATAAAGGTGAACACAACCATTCGAAGCCACAGCTTCCTAAGCGCAACTCAGCAGGGACACAAGGATCAGGGGTGGTGTCTGATGGAATGGTTCAAGACATGTGGAGTAATAGCCACAGTGAGAGGAATGAAGGCAATGAAGGTAGAGTAGAGAACACAGGACTGTCTGTGCTTTCAGATTATCACGTCAAAGTTCCACAGCCTAATGATTCTGCTATAAACATTGGTGCAACTAATGCTGGTGGAGGAAGCACGGAAAACTCCTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGATTTGAGGCACAGGAAGATGAACCCAGaagtaaaaaaagGAAAAATGAGAATCAATCCAATGATGCAACGTTATCAGAGGAAGGTTTAGTAGAGCCGCGCACTGTGATGCAAAGTTTTGCGGATTCTGAAATACTTGGAGACGGCTTTCGCTGGAGGAAATATGGGCAGAAGGTGGTGAAGGGCAATCCATATCCCAGAAGTTACTATAGATGTACTAATATCAAGTGTAACGTTCGCAAACACGTGGAGAGAGCAATAGATGATCCAAGGTCATTTGTCACTACATATGAGGGAAAGCACAATCATGAGAAGCCACTCAAGAGCACAGGAAACGCGGCCTCCGAAAGAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATGA 1410 0.4355 MDIKEAERVVIAKPVASRPTCSTFRSFSELLAGAINASPAIASSHTTVSAIRPKTVRFKPAVNHPPAGFVSSQADTFGAALSNSSDKSPKLDTKQSLIYKPTAKFVSKTTVSLLANMGNCSTSQQQTRQSMEANFQHSIHEKFRTNMSSNLDQSITPHAEINQTSEPSKMVQQNIEEDQKALTSSVNCDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSFDGQIAEIVYKGEHNHSKPQLPKRNSAGTQGSGVVSDGMVQDMWSNSHSERNEGNEGRVENTGLSVLSDYHVKVPQPNDSAINIGATNAGGGSTENSCGLSGECEEGSKGFEAQEDEPRSKKRKNENQSNDATLSEEGLVEPRTVMQSFADSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPRSFVTTYEGKHNHEKPLKSTGNAASERDSQASLSKDKP 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1067 469 MobiDBLite consensus disorder prediction 253 269 - -
Ssu4g1067 469 Gene3D WRKY domain 163 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 Gene3D WRKY domain 373 448 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 MobiDBLite consensus disorder prediction 244 269 - -
Ssu4g1067 469 PANTHER WRKY TRANSCRIPTION FACTOR 44 7 450 - -
Ssu4g1067 469 SMART WRKY_cls 192 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 SMART WRKY_cls 387 446 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 ProSiteProfiles WRKY domain profile. 382 447 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 ProSiteProfiles WRKY domain profile. 194 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 MobiDBLite consensus disorder prediction 340 362 - -
Ssu4g1067 469 Pfam WRKY DNA -binding domain 389 445 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 Pfam WRKY DNA -binding domain 194 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 MobiDBLite consensus disorder prediction 310 373 - -
Ssu4g1067 469 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 7 450 IPR044810 GO:0003700
Ssu4g1067 469 SUPERFAMILY WRKY DNA-binding domain 381 447 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 SUPERFAMILY WRKY DNA-binding domain 191 251 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu4g1067 469 MobiDBLite consensus disorder prediction 437 469 - -
Ssu4g1067 469 MobiDBLite consensus disorder prediction 437 452 - -
Ssu4g1067 469 MobiDBLite consensus disorder prediction 312 333 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1067 Ssu-Chr4 17022386 17024908 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1067 389 447 WRKY Transcription Factor Family AT2G37260 57.627 7.65e-16 77.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu4g1067 WRKY 7.3e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1067 - - gmx:100794069 843.958