Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1063 ATGCCGCCGAAGCAGCAATCAAAAGCTGATCTATCGAAGAAGCAGAAGATTGTAGAGGACAAAACCTTCGGTCTAAAAAACAAGAACAAGAGCAAAAATGTCCAGAAATACGTCCAGAACCTCAAGCAATCCGTACAACCCAAACCCGACCCTTCCAAACTCGCTGCCAAGAAAAAGAAGGAGGAAGAGAAGGCCAAGGACAAGGAGTTGAATGATTTGTTCAAAATTGCTGTTAGTCAGCCTAAGGTGCCAGTCGGTGTTGATCCTAAGTCCATATTGTGTGAGTTTTTTAAAGTGGGGCAGTGTGCCAAGGGCTTCAAGTGCAAGTTCTCCCATGATTTGAATGTTCAGAGGAAAGGGGAAAAGATTGACCTTTATAGTGATACGCGTGACCAGGAAACAATGGAGGATTGGGATCAAGAAACCTTGGAGAAGGTAGTGGAGTCGAAGAAAACCGAGTATAATCAGAACAAACCAACTGACATAGTCTGTAAATACTTTTTGGAAGCAGTGGAGAAGAAGCAATATGGTTGGTTCTGGGACTGCCCCAATGGTGGTAAGAATTGCCACTATAGACATGCCCTTCCCCCTGgatatgttttaaaatctcaaatgaAGGCTCTATTAGAGGAGGaaactgaaaaaataacaatagaGGAGGAGATTGAAAATCaggtgaaaatatttttctacaaggAGCTATGCCACTTGATAATATTGCATTAG 726 0.3981 MPPKQQSKADLSKKQKIVEDKTFGLKNKNKSKNVQKYVQNLKQSVQPKPDPSKLAAKKKKEEEKAKDKELNDLFKIAVSQPKVPVGVDPKSILCEFFKVGQCAKGFKCKFSHDLNVQRKGEKIDLYSDTRDQETMEDWDQETLEKVVESKKTEYNQNKPTDIVCKYFLEAVEKKQYGWFWDCPNGGKNCHYRHALPPGYVLKSQMKALLEEETEKITIEEEIENQVKIFFYKELCHLIILH 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1063 241 ProSiteProfiles Zinc finger C3H1-type profile. 158 196 IPR000571 GO:0046872
Ssu4g1063 241 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 21 1 225 - -
Ssu4g1063 241 SMART c3hfinal6 158 195 IPR000571 GO:0046872
Ssu4g1063 241 SMART c3hfinal6 88 114 IPR000571 GO:0046872
Ssu4g1063 241 MobiDBLite consensus disorder prediction 40 64 - -
Ssu4g1063 241 ProSiteProfiles Zinc finger C3H1-type profile. 88 115 IPR000571 GO:0046872
Ssu4g1063 241 SUPERFAMILY CCCH zinc finger 88 113 IPR036855 GO:0046872
Ssu4g1063 241 PANTHER ZINC FINGER-CONTAINING PROTEIN P48ZNF 1 225 - -
Ssu4g1063 241 Gene3D - 87 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1063 Ssu-Chr4 16970171 16971332 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Ssu4g1063 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1063 - - gmx:100806617 406.757